View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_13 (Length: 461)
Name: NF17434_low_13
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 32264942 - 32265373
Alignment:
| Q |
12 |
agtgcaaacctttacgaacactaccctcaacaacaagatcagaacatagcaataattaaaaaagactgtttttacgcaaattaaactaagtgataactga |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32264942 |
agtgcaaacctttacaaacactaccctcaacaacaagatcagaacatagcaaaaattaaaaaagactgtttttatgcaaattaaactaagtgataactga |
32265041 |
T |
|
| Q |
112 |
aaactaaccacatgctaccacggtatttcaacgtataaggtccactctccaacgtcctatcaaaatgactatgaaccttatgcctctctttcccactctg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265042 |
aaactaaccacatgctaccacggtatttcaacgtataaggtccactctccaacgtcctatcaaaatgactatgaaccttatgcctctctttcccactctg |
32265141 |
T |
|
| Q |
212 |
atccaaaagcgttaattcaaaaagtgccctaacatcagtcccttcactcgcaagcgcgatgaaaagcgacacatacgtagcattatcctccacgcttttc |
311 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265142 |
atccaaaagcgttaattcaaaaagcgccctaacatcagtcccttcactcgcaagcgcgatgaaaagcgacacatacgtagcattatcctccacgcttttc |
32265241 |
T |
|
| Q |
312 |
ccatcagggtaaaaataaatcgcccattcgtacccaccaacggtgaaaatctccgatgctatgtatttcccaattccaatcccttttgagagtgaatacc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265242 |
ccatcagggtaaaaataaatcgcccattcgtacccaccaacggtgaaaatctccgatgctatgtatttcccaattccaatcccttttgagagtgaatacc |
32265341 |
T |
|
| Q |
412 |
ccgttatcttgaacctgtgtgagcctttgatg |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
32265342 |
ccgttatcttgaacctgtgtgagcctttgatg |
32265373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 118 - 439
Target Start/End: Complemental strand, 37609779 - 37609458
Alignment:
| Q |
118 |
accacatgctaccacggtatttcaacgtataaggtccactctccaacgtcctatcaaaatgactatgaaccttatgcctctctttcccactctgatccaa |
217 |
Q |
| |
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||||||| ||||| ||||||||||| |||||||||||||| || | ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37609779 |
accacatactaccgcggtatttcaaggtataaggtccactttcaagagtcctctcaaaatggctatgaaccttatgcctctctttcccactctgatccaa |
37609680 |
T |
|
| Q |
218 |
aagcgttaattcaaaaagtgccctaacatcagtcccttcactcgcaagcgcgatgaaaagcgacacatacgtagcattatcctccacgcttttcccatca |
317 |
Q |
| |
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||| || || |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || || || |||||| |
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| T |
37609679 |
aagggtcaactcaaaaagagccctaacatcagtcccatcactcgcaagcgcaatgaaaagcgacacataggtagcattatcctcaacactctttccatca |
37609580 |
T |
|
| Q |
318 |
gggtaaaaataaatcgcccattcgtacccaccaacggtgaaaatctccgatgctatgtatttcccaattccaatcccttttgagagtgaataccccgtta |
417 |
Q |
| |
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||||| |||||||| ||||| |||||||||||||| | || || ||||| ||||||||||||||||| || |||||||| || || || ||||| || | |
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| T |
37609579 |
gggtagaaataaatggcccaatcgtacccaccaaccgaaaagatatccgacgctatgtatttcccaatcccgatccctttcgaaagcgagtacccagtga |
37609480 |
T |
|
| Q |
418 |
tcttgaacctgtgtgagccttt |
439 |
Q |
| |
|
|||||||| ||| |||||||| |
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|
| T |
37609479 |
tcttgaactggtgcgagccttt |
37609458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 37917767 - 37917635
Alignment:
| Q |
170 |
atcaaaatgactatgaaccttatgcctctctttcccactctgatccaaaagcgttaattcaaaaagtgccctaacatcagtcccttcactcgcaagcgcg |
269 |
Q |
| |
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||||||||| ||||||||||||||| || | | ||||||||||| | |||||| | ||||||||| || || ||||| || ||||||||||| | |||| |
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| T |
37917767 |
atcaaaatggctatgaaccttatgcttcccctgaccactctgatcaacaagcgtgagttcaaaaagcgctctcacatccgttccttcactcgccaacgcg |
37917668 |
T |
|
| Q |
270 |
atgaaaagcgacacatacgtagcattatcctcc |
302 |
Q |
| |
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||||||| ||| ||||||| || |||||||||| |
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| T |
37917667 |
atgaaaaccgaaacatacgcagaattatcctcc |
37917635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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