View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_17 (Length: 421)
Name: NF17434_low_17
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 48999851 - 48999457
Alignment:
| Q |
8 |
agaaaatcttgccttctactttctttctgctcgtgatgctcctgagctattcacaagcataaaatcaaccttcccttatctaaacatgacgatttatcac |
107 |
Q |
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| T |
48999851 |
agaaaatcttgccttctactttctttctgctcatggtgctcctgaactattcacaagcataaaatcaaccttcccttatctaaacatgacgatttatcac |
48999752 |
T |
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| Q |
108 |
tttaattctgatcgtgttcgcggtaagatatcaaagtccattagaaaagcattggatcaacctttgaattatgcaaggatatatcttgcagatacaatac |
207 |
Q |
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| T |
48999751 |
tttaattctgatcgtgttcgcggtaagatatcaaagtccattagaaaagcattggatcaacctttgaattatgcaaggatatatcttgcagatacaatac |
48999652 |
T |
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| Q |
208 |
cagaaaatgtacaacgtgtgatatatttagattctgaccttgttgtggttgatgatatagctaagctttggggtgtagacatggaagggaaagtagtggc |
307 |
Q |
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| T |
48999651 |
cagaaaatgtacaacgtgtgatatatttagattctgaccttgttgtagttgatgatatagctaagctttggggtgtagacatggaagggaaagtagtggc |
48999552 |
T |
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| Q |
308 |
tggtccagaatattgtcatacagatttcacattgtatttcacaaaacaattttggtcggacccggttctcgcaaagacgtttgacggaagaaagc |
402 |
Q |
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| T |
48999551 |
tgctccagaatattgtcatacagatttcacattgtatttcacaaaacaattttggtcggacccggttctggcaaagacgtttgacggaagaaagc |
48999457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 37501200 - 37501091
Alignment:
| Q |
240 |
tctgaccttgttgtggttgatgatatagctaagctttggggtgtagacatggaagggaaagtagtggctggtccagaatattgtcatacagatttcacat |
339 |
Q |
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| T |
37501200 |
tctgatcttgttgttgttgatgacattgcaaagctttgggaagttgacttgggtggcaaggtagtggctgcaccagaatattgtcatgcgaatttcacaa |
37501101 |
T |
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| Q |
340 |
tgtatttcac |
349 |
Q |
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||||||||| |
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| T |
37501100 |
ggtatttcac |
37501091 |
T |
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