View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_19 (Length: 413)
Name: NF17434_low_19
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 40331596 - 40331827
Alignment:
| Q |
20 |
gagagagcagcatattggttgatgcgtaaattttcatcaccacttaattgaaaggaagatagagaattttgaactgtgtcatataaatcagattttcggt |
119 |
Q |
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| T |
40331596 |
gagagagcagcatattggttgatgcgtaaattgtcatcaccacttatttgaaaggaagatagagaattttgaactgtgtcatataaaccaagttttcggt |
40331695 |
T |
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| Q |
120 |
attctgccgctttgtgctaggcgccagccactcacagaagtagacattttcccggacttccattctgcatcatatgcccactacagagagcctggtgtgg |
219 |
Q |
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| T |
40331696 |
attctgccgctttgtgctaggcgccagccagtcacagaagtagacatttccccagacttccattttgcgtcgtatgcccactatagagagcctggtgtga |
40331795 |
T |
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| Q |
220 |
tttcgtaggtctggtgtataaaacattaggta |
251 |
Q |
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| T |
40331796 |
tttcgtaagtctggtgtataaaacattaggta |
40331827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 40331886 - 40331965
Alignment:
| Q |
323 |
caagagttggtgtcttttatgtgagattctagagttaagaaacatattctaaacatcttgagtagtgatattttcttgga |
402 |
Q |
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| T |
40331886 |
caagagtttgtgtcttttatgtgagattctagagttaagaaacatattctaaacatcttgagtagtgatattttattgga |
40331965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 40316073 - 40316160
Alignment:
| Q |
20 |
gagagagcagcatattggttgatgcgtaaattttcatcaccacttaattgaaaggaagatagagaattttgaactgtgtcatataaat |
107 |
Q |
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| T |
40316073 |
gagagagcagcatagtggttgatgagtaaattgtaatcaccacttatttgaaggcaggatagataattttgaattgtgtcatataaat |
40316160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 40326147 - 40326234
Alignment:
| Q |
20 |
gagagagcagcatattggttgatgcgtaaattttcatcaccacttaattgaaaggaagatagagaattttgaactgtgtcatataaat |
107 |
Q |
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| T |
40326147 |
gagagagcagcatagtggttgatgagtaaattgtaatcaccacttatttgaaggcaggatagataattttgaattgtgtcatataaat |
40326234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 40331849 - 40331883
Alignment:
| Q |
275 |
aatctatagtgaggaccaaaaggaacgactcttag |
309 |
Q |
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| T |
40331849 |
aatctatagtgaggaccaaaagggacgactcttag |
40331883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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