View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_2 (Length: 812)
Name: NF17434_low_2
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 289 - 758
Target Start/End: Original strand, 28536380 - 28536849
Alignment:
| Q |
289 |
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttcatcagtataaagtaatgctctgaaatttcaaa |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28536380 |
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaattcatttcatcagtataaagtaatgctctgaaatttcaaa |
28536479 |
T |
|
| Q |
389 |
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaagaaagcaagaaggaagaacgacacaaaaa |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28536480 |
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaagaacgcaagaaggaagaacgacacaaaaa |
28536579 |
T |
|
| Q |
489 |
gtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536580 |
gtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta |
28536679 |
T |
|
| Q |
589 |
cgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca |
688 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536680 |
cgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca |
28536779 |
T |
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| Q |
689 |
aattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
758 |
Q |
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| T |
28536780 |
aattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 28536057 - 28536317
Alignment:
| Q |
29 |
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536057 |
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt |
28536156 |
T |
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| Q |
129 |
gaacatctgtactagaccaggcagctaccttgcaaatacatgctagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca |
228 |
Q |
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| T |
28536157 |
gaacagctgtactagaccaggcagctaccttgcaaatacatgttagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca |
28536256 |
T |
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| Q |
229 |
gccacataggtgcaaaatgtgggggaatgcattctctcaattgtaatttaacacgaggata |
289 |
Q |
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| T |
28536257 |
gccacataggtgcaaaatgtgggggaatggattctctcaattgtaatttaacacgaggata |
28536317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 692 - 800
Target Start/End: Original strand, 28536833 - 28536941
Alignment:
| Q |
692 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
791 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
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| Q |
792 |
cacaggttc |
800 |
Q |
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||||||||| |
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| T |
28536933 |
cacaggttc |
28536941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 54492190 - 54492156
Alignment:
| Q |
310 |
acactttaccttctcatgtgtaaattacacatgag |
344 |
Q |
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| T |
54492190 |
acactttaccttctcatgtgaaaattacacatgag |
54492156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 17429217 - 17429155
Alignment:
| Q |
294 |
tgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttc |
356 |
Q |
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|||||||| | |||| |||||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
17429217 |
tgaatggtaagagatcacactttagtatctcatgagtaaattacacatgagagaatccatttc |
17429155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 42971584 - 42971534
Alignment:
| Q |
295 |
gaatggtgaaagatgacactttacct-tctcatgtgtaaattacacatgag |
344 |
Q |
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||||||||| |||||||||||||||| |||||||| |||||||||||||| |
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| T |
42971584 |
gaatggtgagagatgacactttacctctctcatgtaaaaattacacatgag |
42971534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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