View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_21 (Length: 406)
Name: NF17434_low_21
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 25163171 - 25162986
Alignment:
| Q |
173 |
gaaattcattttttaaagatgaacgaacctcaatcactataatatataagtaatattcctatcaattgagctaaatttacggagacatttagataaacta |
272 |
Q |
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| T |
25163171 |
gaaattcactttttaaagatgaacgaacctcaatcactata---tataagtaatgttcctatcaactgagctaaatttacggaaacactcagataaacta |
25163075 |
T |
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| Q |
273 |
ttttatcctcatgtttaaaacatttgaattatacaatgattattataagtaacacgacgtaaatacttgtcatcgacaattataagaaa |
361 |
Q |
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| T |
25163074 |
ttttatcctcatgtttaaaacatttgaattatacaatgattattataagtaacacgacgtaaatacttgtcatcgacaattataagaaa |
25162986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 25163314 - 25163145
Alignment:
| Q |
1 |
acacgatgaaataatgctccaatttgataatctttactgtcccaattctaacaatgatagataccaatgcataggtttcgtgcatggccacgctattaag |
100 |
Q |
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| T |
25163314 |
acacgatgaaataatgctccaatttgataatctttcctgtcccaattc----aatgatagataccaatgaataagtttcgtgcatggccacgctattaag |
25163219 |
T |
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| Q |
101 |
ctaggtaggattacgaagatcaaccatttttagtagctcaacgattaaaaattcactttttaaaagatgaacgaa |
175 |
Q |
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| T |
25163218 |
ctaggtaggattacgaagatcaaccatttttagtagctcaacaattagaaattcacttttt-aaagatgaacgaa |
25163145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25164079 - 25164015
Alignment:
| Q |
1 |
acacgatgaaataatgctccaatttgataatctttactgtcccaattctaacaatgatagatacc |
65 |
Q |
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| T |
25164079 |
acacgatgaaataatgctccaatttgataatcttcactgtcccaattctgacaatgatagatacc |
25164015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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