View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_24 (Length: 368)
Name: NF17434_low_24
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 52234327 - 52234113
Alignment:
| Q |
16 |
aatatgcagtttaattgtgatttgaaaa-gatttatggacacattacatctaataattccattttacctgtacattagagagaatttaggaactattaat |
114 |
Q |
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| T |
52234327 |
aatatgcagtttaattgtgatttgaaaaagatttatgcatacattacatctaataattccattttacctgtacattagagagaatctaggaactattaat |
52234228 |
T |
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| Q |
115 |
atgataaattggcataattaagacatg----tgattgtatttgtagagagattttaggaaatatcaatattatgagctagtatttgttaggaatgaaccg |
210 |
Q |
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| T |
52234227 |
atgataaattggcataattaagacatgtagatgattgtatttgtagagagattttaggaactatcaatattatgagctagtatttgttaggaatgaaccg |
52234128 |
T |
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| Q |
211 |
cacgcgaatatgtca |
225 |
Q |
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| T |
52234127 |
cacgcgaatatgtca |
52234113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 52234112 - 52234037
Alignment:
| Q |
277 |
gccaaacggtttatttcgattggtgagtttttat--gtttgatggtttgtgagattttattagtgattaaccattt |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
52234112 |
gccaaacggtttatttcgattggtgagtttttatatgtttgatggtttgtgagattttatcagtgattaaccattt |
52234037 |
T |
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