View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17434_low_26 (Length: 358)

Name: NF17434_low_26
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17434_low_26
NF17434_low_26
[»] scaffold0634 (1 HSPs)
scaffold0634 (13-358)||(2747-3092)
[»] chr3 (17 HSPs)
chr3 (17-197)||(18914193-18914373)
chr3 (14-358)||(41455797-41456142)
chr3 (234-351)||(13302844-13302961)
chr3 (234-355)||(13324428-13324549)
chr3 (234-351)||(13313520-13313637)
chr3 (78-138)||(18136117-18136177)
chr3 (17-69)||(18136253-18136306)
chr3 (275-357)||(16802093-16802175)
chr3 (17-75)||(18129733-18129792)
chr3 (319-358)||(24192272-24192311)
chr3 (275-358)||(17243261-17243343)
chr3 (78-134)||(18129607-18129663)
chr3 (17-75)||(13036915-13036973)
chr3 (305-358)||(55499751-55499804)
chr3 (17-50)||(31690553-31690586)
chr3 (17-50)||(31943629-31943662)
chr3 (17-49)||(19344139-19344171)
[»] scaffold0026 (1 HSPs)
scaffold0026 (13-351)||(12534-12872)
[»] chr2 (14 HSPs)
chr2 (13-358)||(26582856-26583206)
chr2 (13-331)||(23168973-23169294)
chr2 (13-331)||(23580230-23580551)
chr2 (238-355)||(23062983-23063100)
chr2 (248-351)||(23264421-23264524)
chr2 (238-355)||(24660876-24660993)
chr2 (305-358)||(21907744-21907797)
chr2 (295-352)||(23089665-23089722)
chr2 (295-352)||(23102093-23102150)
chr2 (275-358)||(23878286-23878368)
chr2 (17-75)||(20914263-20914321)
chr2 (321-358)||(5706721-5706758)
chr2 (236-350)||(26884503-26884617)
chr2 (17-49)||(14563981-14564013)
[»] scaffold0249 (2 HSPs)
scaffold0249 (78-191)||(7557-7670)
scaffold0249 (17-85)||(7730-7798)
[»] scaffold0456 (2 HSPs)
scaffold0456 (186-351)||(243-407)
scaffold0456 (186-351)||(7388-7552)
[»] chr6 (21 HSPs)
chr6 (13-358)||(29614845-29615195)
chr6 (94-355)||(25396340-25396600)
chr6 (14-129)||(12167420-12167535)
chr6 (14-129)||(19877513-19877628)
chr6 (14-129)||(19883289-19883404)
chr6 (14-129)||(19286329-19286444)
chr6 (243-358)||(18799754-18799869)
chr6 (14-129)||(19786751-19786866)
chr6 (275-351)||(9186827-9186903)
chr6 (275-352)||(21565822-21565899)
chr6 (273-358)||(12167637-12167721)
chr6 (273-358)||(19286546-19286630)
chr6 (273-358)||(19877730-19877814)
chr6 (254-351)||(24513456-24513553)
chr6 (308-358)||(25470401-25470451)
chr6 (321-358)||(34640686-34640723)
chr6 (321-358)||(34647360-34647397)
chr6 (19-75)||(23105384-23105440)
chr6 (273-358)||(19786566-19786650)
chr6 (273-358)||(19883506-19883590)
chr6 (17-50)||(19439888-19439921)
[»] scaffold0154 (1 HSPs)
scaffold0154 (234-350)||(30195-30311)
[»] scaffold1773 (2 HSPs)
scaffold1773 (13-129)||(153-269)
scaffold1773 (272-358)||(452-537)
[»] chr7 (22 HSPs)
chr7 (13-129)||(13742686-13742803)
chr7 (13-129)||(13123851-13123967)
chr7 (14-129)||(13006489-13006604)
chr7 (248-355)||(13678772-13678879)
chr7 (13-129)||(12710780-12710896)
chr7 (275-358)||(16676660-16676743)
chr7 (275-358)||(17650896-17650979)
chr7 (305-357)||(11383486-11383538)
chr7 (305-357)||(11389974-11390026)
chr7 (234-358)||(13742945-13743066)
chr7 (17-75)||(12694777-12694835)
chr7 (273-358)||(13006706-13006790)
chr7 (254-355)||(46625275-46625376)
chr7 (322-358)||(12591341-12591377)
chr7 (17-69)||(14945802-14945856)
chr7 (17-69)||(15373395-15373449)
chr7 (272-357)||(12710543-12710627)
chr7 (272-357)||(13123614-13123698)
chr7 (17-75)||(15142390-15142448)
chr7 (17-75)||(45185638-45185695)
chr7 (17-50)||(1612809-1612842)
chr7 (305-357)||(20311689-20311740)
[»] chr1 (9 HSPs)
chr1 (14-129)||(41110997-41111112)
chr1 (78-138)||(20941657-20941717)
chr1 (238-351)||(11157441-11157554)
chr1 (17-69)||(20941793-20941846)
chr1 (307-358)||(18712117-18712168)
chr1 (17-75)||(23631145-23631203)
chr1 (273-358)||(41111214-41111298)
chr1 (17-75)||(41312336-41312394)
chr1 (17-69)||(20824296-20824349)
[»] scaffold0029 (1 HSPs)
scaffold0029 (13-351)||(110939-111284)
[»] scaffold0138 (1 HSPs)
scaffold0138 (238-355)||(1117-1234)
[»] chr8 (11 HSPs)
chr8 (13-129)||(19902808-19902924)
chr8 (78-138)||(19987990-19988050)
chr8 (17-75)||(20005554-20005612)
chr8 (13-129)||(23865615-23865732)
chr8 (14-91)||(17053780-17053858)
chr8 (272-357)||(23865885-23865970)
chr8 (17-69)||(21282245-21282298)
chr8 (305-357)||(14057251-14057302)
chr8 (248-355)||(18613531-18613637)
chr8 (18-69)||(19988126-19988178)
chr8 (305-354)||(25111354-25111402)
[»] scaffold0317 (1 HSPs)
scaffold0317 (248-355)||(665-772)
[»] scaffold0053 (1 HSPs)
scaffold0053 (125-355)||(81853-82082)
[»] scaffold1061 (1 HSPs)
scaffold1061 (254-355)||(1716-1817)
[»] scaffold0232 (1 HSPs)
scaffold0232 (238-355)||(19049-19166)
[»] scaffold0117 (1 HSPs)
scaffold0117 (13-129)||(9512-9628)
[»] scaffold0461 (2 HSPs)
scaffold0461 (275-358)||(683-766)
scaffold0461 (275-358)||(7619-7702)
[»] scaffold0348 (3 HSPs)
scaffold0348 (78-138)||(1527-1587)
scaffold0348 (17-69)||(1663-1716)
scaffold0348 (17-50)||(3107-3140)
[»] scaffold0094 (1 HSPs)
scaffold0094 (248-355)||(51554-51661)
[»] chr5 (10 HSPs)
chr5 (78-138)||(22232436-22232496)
chr5 (14-129)||(23527632-23527747)
chr5 (305-358)||(18408578-18408631)
chr5 (17-66)||(22232575-22232625)
chr5 (273-358)||(23527904-23527988)
chr5 (17-75)||(25013745-25013803)
chr5 (17-71)||(10035305-10035359)
chr5 (17-71)||(21901795-21901849)
chr5 (305-351)||(22439360-22439406)
chr5 (17-70)||(18819096-18819149)
[»] chr4 (10 HSPs)
chr4 (78-138)||(14555881-14555941)
chr4 (13-129)||(8046777-8046893)
chr4 (297-358)||(11847462-11847523)
chr4 (272-357)||(8046531-8046616)
chr4 (234-287)||(14485988-14486041)
chr4 (17-69)||(14556017-14556070)
chr4 (17-74)||(30237938-30237995)
chr4 (143-192)||(8046696-8046745)
chr4 (305-354)||(15407454-15407502)
chr4 (321-354)||(53483023-53483056)
[»] scaffold0247 (1 HSPs)
scaffold0247 (295-357)||(10667-10729)
[»] scaffold0077 (3 HSPs)
scaffold0077 (80-133)||(17972-18025)
scaffold0077 (80-133)||(23605-23658)
scaffold0077 (275-358)||(4246-4329)
[»] scaffold0476 (1 HSPs)
scaffold0476 (275-358)||(3928-4011)
[»] scaffold0235 (2 HSPs)
scaffold0235 (305-357)||(23282-23334)
scaffold0235 (275-357)||(15565-15647)
[»] scaffold0222 (1 HSPs)
scaffold0222 (254-353)||(16086-16185)
[»] scaffold0004 (2 HSPs)
scaffold0004 (256-355)||(116183-116282)
scaffold0004 (275-355)||(129275-129355)
[»] scaffold0025 (1 HSPs)
scaffold0025 (319-358)||(15084-15123)
[»] scaffold0139 (1 HSPs)
scaffold0139 (248-353)||(15629-15733)
[»] scaffold0001 (1 HSPs)
scaffold0001 (44-129)||(174440-174525)
[»] scaffold0124 (1 HSPs)
scaffold0124 (306-358)||(34963-35015)
[»] scaffold0028 (1 HSPs)
scaffold0028 (248-355)||(65414-65521)
[»] scaffold0090 (1 HSPs)
scaffold0090 (269-355)||(17497-17583)
[»] scaffold0031 (2 HSPs)
scaffold0031 (238-355)||(121200-121317)
scaffold0031 (238-355)||(132077-132194)
[»] scaffold0011 (1 HSPs)
scaffold0011 (17-69)||(152546-152599)
[»] scaffold0310 (1 HSPs)
scaffold0310 (305-357)||(6876-6927)
[»] scaffold0108 (1 HSPs)
scaffold0108 (17-73)||(45691-45747)
[»] scaffold0535 (1 HSPs)
scaffold0535 (19-69)||(5969-6020)
[»] scaffold0244 (1 HSPs)
scaffold0244 (17-75)||(13789-13847)
[»] scaffold0049 (1 HSPs)
scaffold0049 (17-71)||(42870-42924)
[»] scaffold0107 (1 HSPs)
scaffold0107 (305-358)||(41215-41267)
[»] scaffold0106 (2 HSPs)
scaffold0106 (17-69)||(46695-46748)
scaffold0106 (17-69)||(50968-51021)
[»] scaffold1853 (1 HSPs)
scaffold1853 (17-69)||(741-793)
[»] scaffold0088 (1 HSPs)
scaffold0088 (17-49)||(31790-31822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (256-355)||(102557-102656)


Alignment Details
Target: scaffold0634 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 2747 - 3092
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || || ||  || |||||||||||||||   |||||| ||||||    
T  2747 aacctgtgtatatctacatacaactcaactaatacatatgtttcatatgacttactactccgcaactcaaacaatccagaacatagacaattatttataa 2846  T
Q  112 ttatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatc 211  Q
    |||||| |||||||||| ||||||||||  | |||||| |||| |||||||| ||||| |||||||||| ||| ||||||||||||| |||||||||| |    
T  2847 ttatgcgcatacatcaaattcattcaat-aattatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaacc-aattcgatcacc 2944  T
Q  212 agagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagc-aaa 309  Q
     |   ||| |||| || ||||| ||||||||||||| ||||| ||||| || || |||||||||||||||||| | ||||||||  ||||| |||| |||    
T  2945 ggcttgttctagtgggattctggtacctatacaagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctc-gtgcacgaagcaaaa 3043  T
Q  310 gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  3044 gttcagaaagaggctgactaaggctcacttcgcttaagcgacggctagt 3092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 18914193 - 18914373
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataattatg 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||| | ||||||||||||||||||    
T  18914193 tgtgtatatctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaattccaacaatccagaacatacacaattaattataattatg 18914292  T
Q  117 cacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaac 197  Q
    | ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  18914293 ctcatacatcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaac 18914373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 41456142 - 41455797
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    |||||||||||||||||||||||| ||| | | ||||||||||||||||||||| || ||  |  || |||||| |||||||| | |||||| |||||||    
T  41456142 acctgtgtatatctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaactcaaacaattcagaacattcacaattatttataat 41456043  T
Q  113 tatgcacatacatcaatttcattcaat-gtaatatataatcacttgat-ttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcat 210  Q
    ||||| | ||||||||||||||||||| ||  | |||| |||||| || ||| |||||| | |||||||| ||||||||||| ||| | ||||||||       
T  41456042 tatgcgcttacatcaatttcattcaatagt--tgtatattcacttaatcttcctactcaattatctccaacatttactaacaccaatc-aattcgattgc 41455946  T
Q  211 cagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaaga-gatattttagaatgctcaaaaggtcccctcaatgcacaaagcaa 308  Q
    |||   ||| ||||||| ||||| ||||||||| ||||||||| ||||| ||||| ||  ||  |||| |||||  | |||||||| |||||| ||||||    
T  41455945 cagcttgttctagtaggattctgatacctatactaggattatacaagtt-aaagaggaagttaaagaacgctcaggaagtcccctc-atgcactaagcaa 41455848  T
Q  309 -agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
     ||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  41455847 cagttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagt 41455797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 13302961 - 13302844
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||||||| ||||||| | || || |||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13302961 tacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13302863  T
Q  333 tccacttcgcttaagcgac 351  Q
      ||  |||||||||||||    
T  13302862 ctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 355
Target Start/End: Complemental strand, 13324549 - 13324428
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||||||| ||||||| | || || |||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13324549 tacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13324451  T
Q  333 tccacttcgcttaagcgacggct 355  Q
      ||  |||||||||||| ||||    
T  13324450 ctcagctcgcttaagcgaaggct 13324428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 13313637 - 13313520
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||||||| ||||||| | || ||  ||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13313637 tacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13313539  T
Q  333 tccacttcgcttaagcgac 351  Q
      ||  |||||||||||||    
T  13313538 ctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 18136177 - 18136117
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  18136177 tccaacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 18136306 - 18136253
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  18136306 tgtgtatatctacatacaacttaaccatgcatatgttttcatatgacttacaac 18136253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 16802175 - 16802093
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    ||||||||||||| |||||| ||||||  | |||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||    
T  16802175 aatgctcaaaagggtcccct-aatgcatgaggcaaagttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctag 16802093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 18129792 - 18129733
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata-tgtttcatatgacttacaaccccaca 75  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  18129792 tgtgtatatctacatacaacttaaccatgcatattttttcatatgacttacaactccaca 18129733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 24192272 - 24192311
Alignment:
Q  319 gtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24192272 gtggctgactaaggtccacttcgcttaagcgacggctagt 24192311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 17243343 - 17243261
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||| |||||||    
T  17243343 aatgctcaaaaggatcccct-agtgcacgaggcaaagttca-aaagtggctgactaaggtcatcttcgcttaagcgatggctagt 17243261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 18129663 - 18129607
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcat 134  Q
    ||||||||| |||||||| | ||||||||||||||||||| | ||||||||||||||    
T  18129663 tccaacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 13036973 - 13036915
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  13036973 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 13036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 55499804 - 55499751
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| ||||| |||||||||||||||| || ||||||||||||||||| |||||    
T  55499804 gcaacgttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagt 55499751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 31690586 - 31690553
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  31690586 tgtgtatatctacatacaactcaaccatacatat 31690553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 31943629 - 31943662
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  31943629 tgtgtatatctacatacaactcaaccatacatat 31943662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 19344171 - 19344139
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata 49  Q
    |||||||||||||||||||||| ||||||||||    
T  19344171 tgtgtatatctacatacaacttgaccatacata 19344139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 12872 - 12534
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaacccc-acacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | |||||| | ||||||||||||| || || | | ||| ||||||||||||||| | |||||||||||||    
T  12872 aacctgtgtatatctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataa 12773  T
Q  112 ttatgcacatacatcaatttcattcaat-gtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcat 210  Q
    |||||| ||||||||||||||||||||| ||  |||| | |||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||     
T  12772 ttatgcgcatacatcaatttcattcaatagt--tatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaacc-aattcgatcac 12676  T
Q  211 cagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagc-aa 308  Q
    | |   ||| ||||||| ||||| |||||||||||||  |||| ||||| || || |||||||||||||||||| | ||||||||  ||||| |||| ||    
T  12675 cggcttgttctagtaggattctgatacctatacaagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctc-gtgcacgaagcaaa 12577  T
Q  309 agttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    ||||||||||| ||||||||||||  |||||||||||||||||    
T  12576 agttcagaaagaggctgactaaggctcacttcgcttaagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 26582856 - 26583206
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||||||||| || || ||  || ||||||||||||||| | |||||| ||||||    
T  26582856 aacctgtgtatatctacatacaacttaactattacatatgttttatatgacttactactccgcaactcaaacaatccagaacatacacaattatttataa 26582955  T
Q  112 ttatgcacatacatcaatttcattc--aatgtaa--tatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgat 207  Q
    |||||| |||||||||||  |||||   |||| |  |||||| ||||| ||||||||||||| |||||||||| ||||||||||| ||| | ||||||||    
T  26582956 ttatgcgcatacatcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatc-aattcgat 26583054  T
Q  208 catcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcac-aaag 305  Q
    || | |   ||| || ||||  || | |||||| || ||| |||||  |||| ||||| ||||| |||||||||||| | ||||||||  ||||| |||     
T  26583055 caccggctagttctaataggagtcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctc-ctgcacgaaac 26583153  T
Q  306 caaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
     |||||||||||   |||||||||||    |||||||||||||||||||||||    
T  26583154 aaaagttcagaagaaggctgactaagacttacttcgcttaagcgacggctagt 26583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 23169294 - 23168973
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||| ||||||||| ||||||||||  || | ||||||| |||||||| |||||| || || ||  || |||||||||| |||| | |||| | ||||||    
T  23169294 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaactcaaacaatccagcacatacacaatcatttataa 23169195  T
Q  112 ttatgcacatacatcaatttcattcaa--tgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatca 209  Q
    |||||| ||||||||| |  ||||| |  ||| ||||| | |||| ||||||||||||||  ||||||||||||| | ||||||||||||| | ||||||    
T  23169194 ttatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaa-tgcgatca 23169096  T
Q  210 tcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagca 307  Q
     ||||| ||| ||||||| | ||  ||||||||||||| ||||| ||||||||||| | |||||||||| | ||||||| |||||| | | ||| || ||    
T  23169095 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccct-agtacacgaaaca 23168997  T
Q  308 aagttcagaaagtggctgactaag 331  Q
    |  ||||||||| |||||||||||    
T  23168996 attttcagaaagaggctgactaag 23168973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 23580551 - 23580230
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||| ||||||||| ||||||||||  || | ||||||| |||||||| |||||| || || ||  || |||||||||| |||| | |||| | ||||||    
T  23580551 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaactcaaacaatccagcacatacacaatcatttataa 23580452  T
Q  112 ttatgcacatacatcaatttcattcaa--tgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatca 209  Q
    |||||| ||||||||| |  ||||| |  ||| ||||| | |||| ||||||||||||||  ||||||||||||| | ||||||||||||| | ||||||    
T  23580451 ttatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaa-tgcgatca 23580353  T
Q  210 tcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagca 307  Q
     ||||| ||| ||||||| | ||  ||||||||||||| ||||| ||||||||||| | |||||||||| | ||||||| |||||| | | ||| || ||    
T  23580352 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccct-agtacacgaaaca 23580254  T
Q  308 aagttcagaaagtggctgactaag 331  Q
    |  ||||||||| |||||||||||    
T  23580253 attttcagaaagaggctgactaag 23580230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 238 - 355
Target Start/End: Original strand, 23062983 - 23063100
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    |||| |||| ||||| ||||||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| ||||||||||||||||||| |    
T  23062983 tatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcaa 23063081  T
Q  337 cttcgcttaagcgacggct 355  Q
    |||||||||||||||||||    
T  23063082 cttcgcttaagcgacggct 23063100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 23264421 - 23264524
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  23264421 ttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 23264519  T
Q  347 gcgac 351  Q
    |||||    
T  23264520 gcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 355
Target Start/End: Original strand, 24660876 - 24660993
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||| ||| |||| ||||||||||||||||  |      
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagtaaaattcaaaaagtggctgactaagacctt 24660974  T
Q  337 cttcgcttaagcgacggct 355  Q
    ||| |||||||||||||||    
T  24660975 ctttgcttaagcgacggct 24660993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 21907744 - 21907797
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||| |||||||||||||||||||  |||||||||||||| |||||||    
T  21907744 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagt 21907797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 23089722 - 23089665
Alignment:
Q  295 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||| | |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  23089722 aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacg 23089665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 23102150 - 23102093
Alignment:
Q  295 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||| | |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  23102150 aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacg 23102093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 23878286 - 23878368
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| |||||| | ||||| | |||| ||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  23878286 aatgctcaaaaggatcccct-agtgcacgaggcaaggttca-aaagtggctgactaaggtcatcttcgcttaagcgacggctagt 23878368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 20914321 - 20914263
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  20914321 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 20914263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 5706758 - 5706721
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5706758 ggctgactaaggttcacttcgcttaagcgacggctagt 5706721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 26884503 - 26884617
Alignment:
Q  236 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 334  Q
    ||||||||||  ||||| ||| | ||||| | |||| | ||| ||||||||| |||||| | ||||| |||||| |||||||||| ||||||||||||      
T  26884503 cctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccct-agtgcacgaagcaaggttcagaaagaggctgactaaggct 26884601  T
Q  335 cacttcgcttaagcga 350  Q
    || |||||||||||||    
T  26884602 cagttcgcttaagcga 26884617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 14563981 - 14564013
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata 49  Q
    |||||||||||||||||||||| ||||||||||    
T  14563981 tgtgtatatctacatacaacttgaccatacata 14564013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 7670 - 7557
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctc 177  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||  || |||||| ||||||||||||||||||| |||||||    
T  7670 tccaacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctc 7571  T
Q  178 caaaatttactaac 191  Q
    ||||||| ||||||    
T  7570 caaaattcactaac 7557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 7798 - 7730
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccacacttccaacaa 85  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |||| || || |||||||||    
T  7798 tgtgtatatctacatacaacttaacaatgcatatgtttcatatgacttgcaactccgcaattccaacaa 7730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 351
Target Start/End: Original strand, 243 - 407
Alignment:
Q  186 actaacatcaaccaaattcgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaa 284  Q
    ||||||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||     
T  243 actaacatcaaccaa-ttcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaag 341  T
Q  285 aggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    | |||||||   ||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  342 atgtcccct-tgtgcacgaagcaaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 351
Target Start/End: Original strand, 7388 - 7552
Alignment:
Q  186 actaacatcaaccaaattcgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaa 284  Q
    ||||||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||     
T  7388 actaacatcaaccaa-ttcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaag 7486  T
Q  285 aggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    | |||||||   ||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  7487 atgtcccct-tgtgcacgaagcaaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 358
Target Start/End: Complemental strand, 29615195 - 29614845
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||||||||||||||||||||||||  || | |||||||||||||||||||||||  | || ||  | |||||||||||||||| | |||||| ||||||    
T  29615195 aacctgtgtatatctacatacaactcgactattacatatgtttcatatgacttactgctccgcaact-caacaatccagaacatacacaattatttataa 29615097  T
Q  112 ttatgcacatacatcaatttcattc--aatgtaatat------ataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaatt 203  Q
    |||| |||||||||||||  |||||   |||| ||||      ||| ||||||| ||||||||||| |||||||||| ||||||||||| ||| | ||||    
T  29615096 ttattcacatacatcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatc-aatt 29614998  T
Q  204 cgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcac- 301  Q
    | |||| | |  |||| || || | ||||| ||||||| | ||| |||||  |||| || || ||||| |||||||||||| | || ||||| ||||||     
T  29614997 caatcaccggctcgttctaataagattctgttacctatgccagggttatactagttaaaggaaatattatagaatgctcaagaagttccctc-atgcacg 29614899  T
Q  302 aaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||  |||||||||||   ||||||||||||  ||||||||||||||||||||||||    
T  29614898 aaacaaaagttcagaa---ggctgactaaggctcacttcgcttaagcgacggctagt 29614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 355
Target Start/End: Original strand, 25396340 - 25396600
Alignment:
Q  94 atgcccaattaattataattatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacat 193  Q
    |||| |||||||| ||||| || |  || |||||| |||||||||  || |||||| ||||||| ||||||||||| |||| ||||||||| |||||  |    
T  25396340 atgcacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaatt 25396439  T
Q  194 caaccaaattcgatcatcagagcgttt-agtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tccc 291  Q
    ||||||| |||||| | ||  | |||| |||||| ||| | | | ||||||||| ||||| ||||||||||| | |||||||||||||||||||| | ||    
T  25396440 caaccaa-ttcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagttgaaagaaacattttagaatgctcaaaaggattcc 25396537  T
Q  292 ctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggct 355  Q
    || | ||||| ||||| | |||| ||||||| ||||||||  | ||||||||||||||||||||    
T  25396538 ct-agtgcactaagcataattcaaaaagtggttgactaagacctacttcgcttaagcgacggct 25396600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 12167420 - 12167535
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  12167420 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 12167518  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  12167519 tatgcacatacatcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19877513 - 19877628
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19877513 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19877611  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19877612 tatgcacatacatcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19883289 - 19883404
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19883289 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19883387  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19883388 tatgcacatacatcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19286329 - 19286444
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| | ||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19286329 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19286427  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19286428 tatgcacatacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 18799754 - 18799869
Alignment:
Q  243 aaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcg 341  Q
    |||| ||||| ||||||||||  | || || ||||||| |||||| |||||| ||||||  | |||||||||| ||||||||||||||||||  ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccct-aatgcatgaggcaaagttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  342 cttaagcgacggctagt 358  Q
    |||||||||||||||||    
T  18799853 cttaagcgacggctagt 18799869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 19786866 - 19786751
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  || | ||||||||| ||||||||||||| || ||| |  || ||||||||||| | | | |||||| |||||||    
T  19786866 acctgtgtatatctacatacaactcgactactacatatgtatcatatgacttactactccataactcaaacaatccaga-cttacacaattatttataat 19786768  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19786767 tatgcacatacatcaat 19786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 9186827 - 9186903
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    ||||||||||||| |||||| | ||||| |||||||||||| |||||||||||||||||||  |||||||||||||||    
T  9186827 aatgctcaaaaggatcccct-agtgcacgaagcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 21565899 - 21565822
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||||| || ||| ||||||| | |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  21565899 aatgctcaaaagggtctcct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacg 21565822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 12167637 - 12167721
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  12167637 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 12167721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 19286546 - 19286630
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  19286546 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 19286630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 19877730 - 19877814
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  19877730 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 19877814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 24513553 - 24513456
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||| ||||| |||||||||||||||||||  |||||||||||||||    
T  24513553 aagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaggttcaaaaagtggctgactaaggtcatcttcgcttaagcgac 24513456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 25470451 - 25470401
Alignment:
Q  308 aagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||||  ||||||||||||| |||||||||||||||||| |||||    
T  25470451 aagttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagt 25470401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 34640723 - 34640686
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  34640723 ggctgactaaggttcacttcgcttaagcgacggctagt 34640686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 34647397 - 34647360
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  34647397 ggctgactaaggttcacttcgcttaagcgacggctagt 34647360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23105384 - 23105440
Alignment:
Q  19 tgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  23105384 tgtatatctacatacaactgaacaatgcatatatataatatgacttacaaccccaca 23105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 19786650 - 19786566
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||  |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  19786650 agaacgctcaagaagtcccctca-tgcattaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 19786566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 19883506 - 19883590
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||| | |||||| ||||||||||||||||||||||||    
T  19883506 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctaattaaggttcacttcgcttaagcgacggctagt 19883590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 19439888 - 19439921
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  19439888 tgtgtatatctacatacaactcaaccatacatat 19439921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 350
Target Start/End: Original strand, 30195 - 30311
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||||    
T  30195 tacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccct-agtgcacgaagcaaaattcagaaagtggctgactaagg 30293  T
Q  333 tccacttcgcttaagcga 350  Q
      ||||||||||||||||    
T  30294 ctcacttcgcttaagcga 30311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 153 - 269
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| || |||||  || ||||||||||||||| | |||||| ||||||    
T  153 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactccacagctc-aacaatccagaacatacacaattatttataa 251  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||| ||||||||    
T  252 ttatgcacacacatcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 452 - 537
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||||    
T  452 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagt 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 13742686 - 13742803
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||||||||||||| ||||||||||  || || |||||||||||||||||||||| || |||||  || ||||||||||||||| | |||||| ||||||    
T  13742686 aacctgtgtatatcaacatacaactcgactattacatatgtttcatatgacttactactccacaactcaaacaatccagaacatacacaattatttataa 13742785  T
Q  112 ttatgcacatacatcaat 129  Q
    |||||| |||||||||||    
T  13742786 ttatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 13123967 - 13123851
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || |||||  | | ||||| |||||||| | |||||| ||||||    
T  13123967 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaattcagaacatacacaattatttataa 13123869  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||||||||||||    
T  13123868 ttatgcacatacatcaat 13123851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 13006489 - 13006604
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| | ||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  13006489 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 13006587  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  13006588 tatgcacatacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 13678772 - 13678879
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| || |||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  13678772 ttatacaaattgaaagaaacattttttaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 13678870  T
Q  347 gcgacggct 355  Q
    |||||||||    
T  13678871 gcgacggct 13678879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 12710896 - 12710780
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || ||| |  | | ||||| |||||||| | |||||| ||||||    
T  12710896 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccataact-cgacaattcagaacatacacaattatttataa 12710798  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||||||||||||    
T  12710797 ttatgcacatacatcaat 12710780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 16676660 - 16676743
Alignment:
Q  275 aatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||| |||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  16676660 aatgctcaaaagggtcccct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagt 16676743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 17650896 - 17650979
Alignment:
Q  275 aatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||| |||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  17650896 aatgctcaaaagggtcccct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagt 17650979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 11383538 - 11383486
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  11383538 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctag 11383486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 11390026 - 11389974
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  11390026 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctag 11389974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 358
Target Start/End: Original strand, 13742945 - 13743066
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagcaaa-gttcagaaagtggctgactaagg 332  Q
    |||||| || ||| |||||  |||| ||||| ||||| |||||||||||| | ||||||||| ||||| || |||| ||||||||   ||||||||||||    
T  13742945 tacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctca-tgcacgaaacaaaagttcagaa---ggctgactaagg 13743040  T
Q  333 tccacttcgcttaagcgacggctagt 358  Q
      ||||||||||||||||||||||||    
T  13743041 ctcacttcgcttaagcgacggctagt 13743066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 12694777 - 12694835
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  12694777 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 12694835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 13006706 - 13006790
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  13006706 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 13006790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 46625275 - 46625376
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||| | |||||| ||||||||||||| | |||| | ||||| || |||| |||| | ||||||||||||||  | |||||||||||||||||    
T  46625275 aagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaaacaaaattcaaagagtggctgactaagacctacttcgcttaagcgacg 46625373  T
Q  353 gct 355  Q
    |||    
T  46625374 gct 46625376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 12591377 - 12591341
Alignment:
Q  322 gctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagt 12591341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 14945856 - 14945802
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg--tttcatatgacttacaac 69  Q
    ||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||    
T  14945856 tgtgtatatctacatacaactaaacaatgcatatgtttttcatatgacttacaac 14945802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 15373449 - 15373395
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg--tttcatatgacttacaac 69  Q
    ||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||    
T  15373449 tgtgtatatctacatacaactaaacaatgcatatgtttttcatatgacttacaac 15373395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 12710627 - 12710543
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   |||||||||||||||||||||||    
T  12710627 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctag 12710543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 13123698 - 13123614
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   |||||||||||||||||||||||    
T  13123698 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctag 13123614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 15142390 - 15142448
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    |||||||||||||||||||||  || || ||||| | | ||||||||||||||||||||    
T  15142390 tgtgtatatctacatacaactccacaatgcatatatataatatgacttacaaccccaca 15142448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 45185638 - 45185695
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||||||| |||||    
T  45185638 tgtgtatatctacatacaacttaacaatgcatatatat-atatgacttacaactccaca 45185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 1612809 - 1612842
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  1612809 tgtgtatatctacatacaactcaaccatacatat 1612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 20311740 - 20311689
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||| ||||||||| ||| |||||  |||||||||||||||||||||    
T  20311740 gcaaagttca-aaagtggctaactgaggtcatcttcgcttaagcgacggctag 20311689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 41110997 - 41111112
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  41110997 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 41111095  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  41111096 tatgcacatacatcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 20941717 - 20941657
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  20941717 tccaacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 11157441 - 11157554
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    |||| |||| ||||| ||||||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| ||||||| |||||||||||      
T  11157441 tatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggttgactaaggtcat 11157539  T
Q  337 cttcgcttaagcgac 351  Q
    |||||||||||||||    
T  11157540 cttcgcttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 20941846 - 20941793
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  20941846 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaac 20941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 18712117 - 18712168
Alignment:
Q  307 aaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||| || ||||||||||||||||  ||||||||||||||||||||||    
T  18712117 aaagttcaaaaggtggctgactaaggtcatcttcgcttaagcgacggctagt 18712168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23631145 - 23631203
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||||||| |||||    
T  23631145 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaactccaca 23631203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 41111214 - 41111298
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  41111214 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 41111298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 41312336 - 41312394
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||| | ||||||||||||| || ||||| | | ||||||||||||||||||||    
T  41312336 tgtgtatatattcatacaacttaacaatgcatatatataatatgacttacaaccccaca 41312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 20824349 - 20824296
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    |||||||||||||||||||||||||  | |||||| |||||||||||| |||||    
T  20824349 tgtgtatatctacatacaacttaacattgcatatgttttcatatgactcacaac 20824296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 110939 - 111284
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| || |||||  || | ||||||||||| | | |||||| ||||||    
T  110939 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactccacaactcga-caatccagaacctacacaattatttataa 111037  T
Q  112 ttatgcacatacatcaatttcattc--aatgtaatat------ataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaatt 203  Q
    ||| ||||||||||||||  |||||   |||| ||||      ||| ||||||| |||||||| || |||||||||| ||||||||||| ||| | |||     
T  111038 ttacgcacatacatcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaacaccaatc-aatc 111136  T
Q  204 cgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcaca 302  Q
    | |||| | |   ||| || |||| ||| | |||||| || ||| |||||  |||| || |||| ||| |||||||||||| | |||||||| ||||||     
T  111137 caatcaccggcttgttctaataggattcagttacctacaccagggttatactagttaaaggagaaattatagaatgctcaagaagtcccctc-atgcact 111235  T
Q  303 aagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    ||| || ||||||||||  |||||||||||   |||||||||||||||||    
T  111236 aagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 355
Target Start/End: Original strand, 1117 - 1234
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  ||     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccct 1215  T
Q  337 cttcgcttaagcgacggct 355  Q
    |||||||||||||||||||    
T  1216 cttcgcttaagcgacggct 1234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 19902924 - 19902808
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || |||||  | | |||||||||||||| | |||||| ||||||    
T  19902924 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaatccagaacatacacaattatttataa 19902826  T
Q  112 ttatgcacatacatcaat 129  Q
    | ||||||||||||||||    
T  19902825 tcatgcacatacatcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 19988050 - 19987990
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||| ||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  19988050 tccaccaatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 20005612 - 20005554
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||    
T  20005612 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaaccccaca 20005554  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 23865615 - 23865732
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatat-gacttacaaccccacacttccaacaatccagaacatgcccaattaattata 110  Q
    ||||||||||||||||||||||||| ||| | | ||||| |||||||| ||||||| || ||  |  || |||||| |||||||| | |||||| |||||    
T  23865615 aacctgtgtatatctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc-aacaattcagaacatacacaattatttata 23865713  T
Q  111 attatgcacatacatcaat 129  Q
    |||||||||||||||||||    
T  23865714 attatgcacatacatcaat 23865732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 17053780 - 17053858
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccaga 91  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||| ||| || |||||  || |||||||||||    
T  17053780 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacatactactccacaactcaaacaatccaga 17053858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 23865885 - 23865970
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   |||||||||||||||||||||||    
T  23865885 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctag 23865970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 21282245 - 21282298
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    ||||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  21282245 tgtgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 21282298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 14057302 - 14057251
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  14057302 gcaaagttca-aaagtggctgattaaggtcatcttcgcttaagcgacggctag 14057251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 18613531 - 18613637
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||  | |||||  ||||||||| ||| |||||| | ||||| | |||||||||| |||||||| ||||||||||  ||||||||||    
T  18613531 ttatacaagttgaaaggaacatttttaaatgctcaagaggatcccct-agtgcacgaggcaaagttca-aaagtggccgactaaggtcatcttcgcttaa 18613628  T
Q  347 gcgacggct 355  Q
    |||||||||    
T  18613629 gcgacggct 18613637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 19988178 - 19988126
Alignment:
Q  18 gtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    |||||||||||||||||||||||| || |||||| ||||||||| ||||||||    
T  19988178 gtgtatatctacatacaacttaacaatgcatatgttttcatatggcttacaac 19988126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 25111354 - 25111402
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 354  Q
    |||||||||| |||||||||||||| ||||  ||||||||||||||||||    
T  25111354 gcaaagttca-aaagtggctgactatggtcatcttcgcttaagcgacggc 25111402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 665 - 772
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| || |||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  665 ttatacaaattgaaagaaacattttttaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 763  T
Q  347 gcgacggct 355  Q
    |||||||||    
T  764 gcgacggct 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 355
Target Start/End: Complemental strand, 82082 - 81853
Alignment:
Q  125 tcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatcagagcgttta-gt 223  Q
    |||| |||||||||  ||||||||| ||||||| |||||||||||  ||| ||||||||| |||||  |||||||| |||||  | ||  | ||||| ||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaa-ttcgactaccaatgtgtttaagt 81984  T
Q  224 agggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtgg 322  Q
    ||| ||| | | | ||||||||| ||||| ||||||||||| | |||||| ||||||||||||| | ||||   || || ||||||| |||| |||||||    
T  81983 aggattcag-tgcatatacaagggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctgg-tgtacgaagcaaaattcaaaaagtgg 81886  T
Q  323 ctgactaaggtccacttcgcttaagcgacggct 355  Q
    |||||||||  | ||||||||||||||||||||    
T  81885 ctgactaagacctacttcgcttaagcgacggct 81853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 1716 - 1817
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||| | |||||| ||||||||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  ||||||||||||||||    
T  1716 aagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaggcaaaattcaaaaagtggctgactaaggtcatcttcgcttaagcgacg 1814  T
Q  353 gct 355  Q
    |||    
T  1815 gct 1817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 355
Target Start/End: Complemental strand, 19166 - 19049
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||||||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  ||     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccct 19068  T
Q  337 cttcgcttaagcgacggct 355  Q
    ||||||||| | |||||||    
T  19067 cttcgcttaggagacggct 19049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 9628 - 9512
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || |||||  | | ||||||||||||||   |||||| ||||||    
T  9628 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaatccagaacatatacaattatttataa 9530  T
Q  112 ttatgcacatacatcaat 129  Q
    | ||||||||||||||||    
T  9529 tcatgcacatacatcaat 9512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 766 - 683
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  766 aatgctcaaaaggatcccct-agtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagt 683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 7702 - 7619
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  7702 aatgctcaaaaggatcccct-agtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagt 7619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 1587 - 1527
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  1587 tccaacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 1716 - 1663
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  1716 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaac 1663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 3107 - 3140
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  3107 tgtgtatatctacatacaactcaaccatacatat 3140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 51554 - 51661
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||||||||||| |||| ||||||||||||||||  |  ||||||||||    
T  51554 ttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacaaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaa 51652  T
Q  347 gcgacggct 355  Q
    |||||||||    
T  51653 gcgacggct 51661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 22232496 - 22232436
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||    
T  22232496 tccaacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 23527632 - 23527747
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || || ||||||| ||   | |||||| |||||||    
T  23527632 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaataatccag-actgacacaattatttataat 23527730  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  23527731 tatgcacatacatcaat 23527747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 18408631 - 18408578
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||| |||||||||||||||||||   |||||||||||||||||||||    
T  18408631 gcaaagttcaaaaagtggctgactaaggtcattttcgcttaagcgacggctagt 18408578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22232625 - 22232575
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttac 66  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  22232625 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttac 22232575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 23527904 - 23527988
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  23527904 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagt 23527988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 25013745 - 25013803
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | | ||||||||||||||||||    
T  25013745 tgtgtatatctacatacaacttaacaatgcatatatataaaatgacttacaaccccaca 25013803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 10035305 - 10035359
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccc 71  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||    
T  10035305 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 10035359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 21901849 - 21901795
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccc 71  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||    
T  21901849 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 21901795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 22439406 - 22439360
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    |||| ||||| ||||||||||||||||||| |||| |||||||||||    
T  22439406 gcaacgttcaaaaagtggctgactaaggtcaactttgcttaagcgac 22439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 18819096 - 18819149
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaacc 70  Q
    ||||||||||||||||||||| ||| || ||||| | | |||||||||||||||    
T  18819096 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaacc 18819149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 14555941 - 14555881
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||    
T  14555941 tccaacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 8046893 - 8046777
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||||||||||||||||||||||||  || | ||||||| ||||||||||||||| || |||||  | ||  |||||| | ||| | |||||| ||||||    
T  8046893 aacctgtgtatatctacatacaactcgactattacatatatttcatatgacttactactccacaact-cagtaatccaaatcatacacaattatttataa 8046795  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||| ||||||||    
T  8046794 ttatgcacacacatcaat 8046777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 11847462 - 11847523
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||||||||||||| ||||||||||||  ||  ||||||||||||||| ||||    
T  11847462 tgcacaaagcaaagttcagaaagaggctgactaaggctcagctcgcttaagcgacgggtagt 11847523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 8046616 - 8046531
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  ||||||||||||  |||||||||||||||||| ||||    
T  8046616 tagaatgctcaagaagtcccctca-tgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctag 8046531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 14485988 - 14486041
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg 287  Q
    ||||||||||||| ||||| ||| ||||||| | ||||||||||||||||||||    
T  14485988 tacctatacaagggttatacaagctgaaagaaacattttagaatgctcaaaagg 14486041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 14556070 - 14556017
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    ||||||||||||||||||||||||  || |||||| ||||||||||||||||||    
T  14556070 tgtgtatatctacatacaacttaataatgcatatgttttcatatgacttacaac 14556017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 30237938 - 30237995
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccac 74  Q
    ||||||||||||||||||||| ||| || ||||| | | |||||||||||||||||||    
T  30237938 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccac 30237995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 8046745 - 8046696
Alignment:
Q  143 atatataatcacttgatttcatactcagtcatctccaaaatttactaaca 192  Q
    ||||||| ||||||| |||||||| || |||||||||| |||||||||||    
T  8046745 atatatattcacttgttttcatacacaatcatctccaacatttactaaca 8046696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 15407454 - 15407502
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 354  Q
    |||||||||| |||||||||||||| ||||  ||||||||||||||||||    
T  15407454 gcaaagttca-aaagtggctgactatggtcatcttcgcttaagcgacggc 15407502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 53483023 - 53483056
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggc 354  Q
    ||||||||||||| ||||||||||||||||||||    
T  53483023 ggctgactaaggttcacttcgcttaagcgacggc 53483056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 10667 - 10729
Alignment:
Q  295 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    ||||||| | |||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  10667 aatgcacgaggcaaagttcaaaaagtggctgactaagatcaacttcgcttaagcgacggctag 10729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 18025 - 17972
Alignment:
Q  80 caacaatccagaacatgcccaattaattataattatgcacatacatcaatttca 133  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  18025 caacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 23658 - 23605
Alignment:
Q  80 caacaatccagaacatgcccaattaattataattatgcacatacatcaatttca 133  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  23658 caacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 4329 - 4246
Alignment:
Q  275 aatgctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||||||| | |  ||||||| | |||| |||||  ||||| |||||||||||| ||||||||||||||||| |||||    
T  4329 aatgctcaaaaggttctcctaatgcacgaggcaacgttcaagaagtgactgactaaggtcaacttcgcttaagcgacgtctagt 4246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 4011 - 3928
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||| || ||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  4011 aatgctcaaaagggtctcct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagt 3928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 23334 - 23282
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  23334 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctag 23282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 15647 - 15565
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    ||||||||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  |||||||||||||| ||||||    
T  15647 aatgctcaaaaggatcccct-agtgcacgaggcaaatttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctag 15565  T

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Target: scaffold0222 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 353
Target Start/End: Original strand, 16086 - 16185
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||||||||    
T  16086 aagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacg 16184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 116183 - 116282
Alignment:
Q  256 gttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 354  Q
    ||||||||| | |||||| ||| ||||||||| |||||| | ||||| | |||||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  116183 gttgaaagaaacattttaaaatactcaaaaggatcccct-agtgcacgaggcaaagttcaaaaaatggctgactaaggtcatcttcgcttaagcgacggc 116281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 129355 - 129275
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggct 355  Q
    ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  |  |||||||||||||||||||    
T  129355 aatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaagcgacggct 129275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 15123 - 15084
Alignment:
Q  319 gtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15123 gtggctgactaaggtccacttcgcttaagcgacggctagt 15084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 15733 - 15629
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||| | |||||  ||||||||||||| || ||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  15733 ttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcct-agtgcacgaggcaaagttca-aaagtggctgactaaggtcatcttcgcttaa 15636  T
Q  347 gcgacgg 353  Q
    |||||||    
T  15635 gcgacgg 15629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 174525 - 174440
Alignment:
Q  44 tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataattatgcacatacatcaat 129  Q
    ||||||| ||||| |||||||||  | || ||  || ||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  174525 tacatatttttcaaatgacttactgctccgcaactcaaacaatccagaacatacacaattatttataattatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 35015 - 34963
Alignment:
Q  306 caaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| |||||||    
T  35015 caaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagt 34963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 65414 - 65521
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||| | |||||| |||| |||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  || |||||||    
T  65414 ttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccct-agtgcacgaggcaaaattcaaaaagtggctgactaaggtcttctccgcttaa 65512  T
Q  347 gcgacggct 355  Q
    | |||||||    
T  65513 gtgacggct 65521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 17497 - 17583
Alignment:
Q  269 ttttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggct 355  Q
    ||||||||||||||||||| || ||| | ||||| || |||| ||||||||||||||||| ||||  |||||||||||||||| ||||    
T  17497 ttttagaatgctcaaaaggctcgcct-agtgcacgaaacaaaattcagaaagtggctgaccaaggctcacttcgcttaagcgaaggct 17583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 355
Target Start/End: Original strand, 121200 - 121317
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||| |||||||  ||| ||||||||||||||||  |      
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaagcaaaagtcaaaaagtggctgactaagacctt 121298  T
Q  337 cttcgcttaagcgacggct 355  Q
    |||||||||||||| ||||    
T  121299 cttcgcttaagcgaaggct 121317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 355
Target Start/End: Original strand, 132077 - 132194
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||| |||||||  ||| ||||||||||||||||  |      
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaagcaaaagtcaaaaagtggctgactaagacctt 132175  T
Q  337 cttcgcttaagcgacggct 355  Q
    |||||||||||||| ||||    
T  132176 cttcgcttaagcgaaggct 132194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 152546 - 152599
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    ||||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  152546 tgtgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 152599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 6876 - 6927
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctag 357  Q
    |||||||||| ||||||||||||| |||||  |||||||||||||||||||||    
T  6876 gcaaagttca-aaagtggctgactgaggtcatcttcgcttaagcgacggctag 6927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 45691 - 45747
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaacccca 73  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||    
T  45691 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaacccca 45747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6020 - 5969
Alignment:
Q  19 tgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    ||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  6020 tgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 5969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 13789 - 13847
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||| | ||| || ||||| | | ||||||||||||||||||||    
T  13789 tgtgtatatctacatacaaatcaacaatgcatatatataatatgacttacaaccccaca 13847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 42924 - 42870
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccc 71  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||    
T  42924 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 42870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 41267 - 41215
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagt 358  Q
    |||||||||| |||||| ||||||||||||  |||||||||||||||| |||||    
T  41267 gcaaagttca-aaagtgtctgactaaggtcatcttcgcttaagcgacgtctagt 41215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 46748 - 46695
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    |||||||||||||||||||||| || || ||||| | |||||||||||||||||    
T  46748 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaac 46695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 51021 - 50968
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    |||||||||||||||||||||| || || ||||| | |||||||||||||||||    
T  51021 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaac 50968  T

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Target: scaffold1853 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1853
Description:

Target: scaffold1853; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 793 - 741
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaac 69  Q
    ||||||||||||||||||||| ||  || ||||||| | ||||||||||||||    
T  793 tgtgtatatctacatacaactcaagaatgcatatgtataatatgacttacaac 741  T

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Target: scaffold0088 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 31790 - 31822
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata 49  Q
    |||||||||||||||||||||||||||| ||||    
T  31790 tgtgtatatctacatacaacttaaccatgcata 31822  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 102656 - 102557
Alignment:
Q  256 gttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 354  Q
    ||||||||| |  ||||| ||| ||||||||| |||||| | ||||| | |||| ||||| |||||||| ||||||||||  |||||||||||||| |||    
T  102656 gttgaaagaaaccttttaaaatactcaaaaggatcccct-agtgcacgaggcaaggttcaaaaagtggccgactaaggtcatcttcgcttaagcgatggc 102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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