View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_29 (Length: 352)
Name: NF17434_low_29
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 11086723 - 11086395
Alignment:
| Q |
18 |
tgtttaacaatgtctgctattaggttttctcatgtaaagtctcttcatagttcaatcaagggtttttccaatttcaatgtccaaaattatcactctaacc |
117 |
Q |
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| T |
11086723 |
tgtttaacaatgtctgctattaggttttctcatgtaaagtctcttcatagttcaatcaagggtttttccaatttcaatgtccaaaattatcactctaacc |
11086624 |
T |
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| Q |
118 |
ctaatgggtcattgaatcttgcaagaatttcaagtttttgtactgatttctcgagccgtggttattcaaaaaatgggtttaagtcacctaagatgtttgc |
217 |
Q |
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| T |
11086623 |
ctaatgggtcattgaatcttgcaagaatttcaagtttttgtactgatttctcgagccgtggttattcaaaaaatgggtttaagtcacctaagatgtttgc |
11086524 |
T |
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| Q |
218 |
tgagactgagtttagaaatttgggttctttatcaggtcataggggtttcaaattcaatgctgcatttgaaacccaagggtttagttcacctagggtatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11086523 |
tgagactgagtttagaaatttgggttctttatcaggtcataggggtttcaaattcaatgctgcatttgaaacccaagggtttagttcacctagggtatgt |
11086424 |
T |
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| Q |
318 |
ttcagtgttgttaatattccctttgcttc |
346 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11086423 |
ttcagtgttgttaatattccctttgcttc |
11086395 |
T |
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