View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_30 (Length: 345)
Name: NF17434_low_30
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 40616853 - 40617177
Alignment:
| Q |
1 |
aaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttgagtattctttcaa |
100 |
Q |
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| T |
40616853 |
aaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttgagtattctttcaa |
40616952 |
T |
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| Q |
101 |
gccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgacaaggtg |
200 |
Q |
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| T |
40616953 |
gccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgacaaggtg |
40617052 |
T |
|
| Q |
201 |
gctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcgacgccctaattctaataaa |
300 |
Q |
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| T |
40617053 |
gctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcgacgccctaattctaataaa |
40617152 |
T |
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| Q |
301 |
ttttccacaccttgaacctccactg |
325 |
Q |
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| T |
40617153 |
ttttccacaccttgaacctccactg |
40617177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 82 - 321
Target Start/End: Original strand, 40627646 - 40627884
Alignment:
| Q |
82 |
tacttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccaca |
181 |
Q |
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| T |
40627646 |
tacttgagtaattttt-aagccatagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccaca |
40627744 |
T |
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| Q |
182 |
atattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcg |
281 |
Q |
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| T |
40627745 |
atattgttatgacaaggtggctgacctgcgtgttccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcc |
40627844 |
T |
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| Q |
282 |
acgccctaattctaataaattttccacaccttgaacctcc |
321 |
Q |
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| T |
40627845 |
tcgccgtgattctaatcatttttccacatcttgaacctcc |
40627884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 96 - 276
Target Start/End: Original strand, 40610453 - 40610633
Alignment:
| Q |
96 |
ttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgaca |
195 |
Q |
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| T |
40610453 |
ttcaagctatagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatattgttacgaca |
40610552 |
T |
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| Q |
196 |
aggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctccc |
276 |
Q |
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| T |
40610553 |
aggtggctgccatgcatgctcctcatcacaaccattcactgaatcacattcatccaccaccttcgccgtcacactcctccc |
40610633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 40610364 - 40610406
Alignment:
| Q |
21 |
caagcttaattttaccttatgcaaattaagcttagtcttatta |
63 |
Q |
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| T |
40610364 |
caagcttaatttaaccttatgcaaattaagcttgttcttatta |
40610406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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