View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_32 (Length: 328)
Name: NF17434_low_32
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 10327394 - 10327122
Alignment:
| Q |
16 |
agaccgttaacttgaagaggggactgttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtctgacacatgcgcaggtttggatatg |
115 |
Q |
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|||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10327394 |
agacagttaacttgaagacggaactgttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtctgacacatgcgcaggtttggatatg |
10327295 |
T |
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| Q |
116 |
acaactggacttggcacaagagtactggttagaaagaacactattggaaatcgcaggagcaattggcacatttacat-atcaaagaatcatttagaacat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
10327294 |
acaactggacttggcacaagagtactggttagaaagaacactattggaaatcgcaggagcaattggcacatttacatgatcaaagaatcatatagaacat |
10327195 |
T |
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| Q |
215 |
taaatcataaagaacagtaaatcggcaattgaataaggcaatcctatgcattaagcatggttgctttgtttaa |
287 |
Q |
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| T |
10327194 |
taaatcataaagattagtaaatcggcaattgaataaggcaatcatatgcatcaaacatggttgttttgtttaa |
10327122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 23645842 - 23646005
Alignment:
| Q |
21 |
gttaacttgaagaggggactgttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtctgacacatgcgcaggtttggatatgacaac |
120 |
Q |
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| T |
23645842 |
gttaacttaaagccgggactattaagtctttcccaatggtccaaggattttattaaatattctcagcgtctgacacatgcgcatgtttggatacgactac |
23645941 |
T |
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| Q |
121 |
tggacttggcacaagagtactggttagaaagaacactattggaaatcgcaggagcaattggcac |
184 |
Q |
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| T |
23645942 |
tggacttgccacaagagtactggttagaaagaacattattggaaattgcaggcgcaattggcac |
23646005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 23869569 - 23869406
Alignment:
| Q |
21 |
gttaacttgaagaggggactgttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtctgacacatgcgcaggtttggatatgacaac |
120 |
Q |
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|||||||||||| |||||| |||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| | |
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| T |
23869569 |
gttaacttgaagctgggactattgcgtctttcccaatggtccaaggattttaataaatattctcagcgtctcacacatgcgcaggtttggatacgactat |
23869470 |
T |
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| Q |
121 |
tggacttggcacaagagtactggttagaaagaacactattggaaatcgcaggagcaattggcac |
184 |
Q |
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| T |
23869469 |
tagatttgccacaggattcctggttagaaagaacattattggaaattggaggcgcaattggcac |
23869406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 17705045 - 17705168
Alignment:
| Q |
42 |
ttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtctgacacatgcgcaggtttggatatgacaactggacttggcacaagagtact |
141 |
Q |
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| T |
17705045 |
ttgcgtctttcctaatggtccaaggattttaataaatattcttggtgtctgacacatgcgcatgtttggatacgactgctggacttgccacaagagtact |
17705144 |
T |
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| Q |
142 |
ggttagaaagaacactattggaaa |
165 |
Q |
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| T |
17705145 |
gcttagaaagaacattattggaaa |
17705168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 17111143 - 17111257
Alignment:
| Q |
39 |
ctgttgcgtctttccaaatggtccaaagattttaataaatattctcaatgtctgacacatgcgcaggtttggatatgacaactggacttggcacaagagt |
138 |
Q |
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|||||||| |||||| ||||||||| |||||||| ||||| ||||| |||| |||||||| ||||||||||| | | ||||||||| |||| || | |
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| T |
17111143 |
ctgttgcggctttcccgatggtccaaggattttaacaaatactctcagcgtctcacacatgcacaggtttggatccggcttctggacttgccacatgaat |
17111242 |
T |
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| Q |
139 |
actggttagaaagaa |
153 |
Q |
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|||||||||| |||| |
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| T |
17111243 |
actggttagagagaa |
17111257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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