View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_38 (Length: 311)
Name: NF17434_low_38
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 14812310 - 14812607
Alignment:
| Q |
12 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14812310 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
14812409 |
T |
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| Q |
112 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14812410 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaa |
14812509 |
T |
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| Q |
210 |
caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataattt |
307 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14812510 |
caaaagcctctttggaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataattt |
14812607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 15259305 - 15259602
Alignment:
| Q |
12 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
111 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15259305 |
gaacctgtggtcagaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
15259404 |
T |
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| Q |
112 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
15259405 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaa |
15259504 |
T |
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| Q |
210 |
caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataattt |
307 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15259505 |
caaaagcctctttgtaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataattt |
15259602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 14804890 - 14805009
Alignment:
| Q |
12 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
111 |
Q |
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|
||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
14804890 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
14804989 |
T |
|
| Q |
112 |
ccataaccattatctctaat |
131 |
Q |
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| T |
14804990 |
cagcaaccattgtctctaat |
14805009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 15251884 - 15252003
Alignment:
| Q |
12 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
111 |
Q |
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||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
15251884 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
15251983 |
T |
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| Q |
112 |
ccataaccattatctctaat |
131 |
Q |
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| ||||||| |||||||| |
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| T |
15251984 |
cagcaaccattgtctctaat |
15252003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 17521870 - 17521573
Alignment:
| Q |
12 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17521870 |
gaacctgtggtcagaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
17521771 |
T |
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| Q |
112 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
17521770 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaa |
17521671 |
T |
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| Q |
210 |
caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataattt |
307 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521670 |
caaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataattt |
17521573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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