View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_43 (Length: 285)
Name: NF17434_low_43
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_43 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 44700414 - 44700140
Alignment:
| Q |
11 |
ttattcttccatgaatgatagctccgtgaaactctgaatgagactaactatgaggactggaaagattctctcgatctctacttagttattaacaatctcg |
110 |
Q |
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| T |
44700414 |
ttattcttccatgaatgatagctccgtgaaactctgaatgagactaactatgaggaccggaaagattctctcgatctctacttagttattaacaatctcg |
44700315 |
T |
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| Q |
111 |
atttagatttaagaactaagaaacctacttcccttacgaatgaatctactgaattccataagattgtcaatggaaaacgagaagattctaacatggtgtc |
210 |
Q |
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| T |
44700314 |
atttagatttaagaactaagaaacctacttcccttacgaatgaatctactgaatcccataagattgtcaatggaaaacgagaagattctaacatggtgtc |
44700215 |
T |
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| Q |
211 |
ttaaggtcatatcttacacgatcgagaagtccattgggcgaatcatcccacaaaatgacaatgccaaaagttatc |
285 |
Q |
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| T |
44700214 |
ttaaggtcatatcttacactatcgataagtccattgggcgaatcatcccacaaaatgacaatgccaaaagttatc |
44700140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 269
Target Start/End: Original strand, 44698455 - 44698623
Alignment:
| Q |
101 |
aacaatctcgatttagatttaagaactaagaaacctacttcccttacgaatgaatctactgaattccataagattgtcaatggaaaacgagaagattcta |
200 |
Q |
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| T |
44698455 |
aacaaccttgatttagttttaaaaactgagaagcctacttcccttaccaatgagtctactgaatcccataagaccctctatggaaaatgggaagggtcta |
44698554 |
T |
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| Q |
201 |
acatggtgtcttaaggtcatatcttacacgatcgagaagtccattgggcgaatcatcccacaaaatgac |
269 |
Q |
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| T |
44698555 |
acaaagtgtcttaaggtcatagcttacactatggagaagtccattagacaaagcatcccacaaaatgac |
44698623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 44700471 - 44700554
Alignment:
| Q |
11 |
ttattcttccatgaatgatagctccgtgaaactctgaatgagactaactatgaggactggaaagattctctcgatctctacttagttat |
99 |
Q |
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| T |
44700471 |
ttattctttcatgatagatagctccgtgaaa-----actgagactaactatgaggaccggaaagattgtctcgatctctactaagttat |
44700554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 11841101 - 11841038
Alignment:
| Q |
39 |
aaactctgaatgagactaactatgaggactggaaagattctctcgatctctacttagttattaa |
102 |
Q |
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| T |
11841101 |
aaactctgaatgggattaactatgaggactggaaagattctctaaatcactacttagttattaa |
11841038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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