View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_44 (Length: 280)
Name: NF17434_low_44
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 38631549 - 38631796
Alignment:
| Q |
12 |
gaatatccaagtataatagcacggctaagctgacaaaggaaaacaagcgcgtagttaacagcacaagagggtgcactcctcgccaacaacagctggtcca |
111 |
Q |
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| T |
38631549 |
gaatatccaagtataatagcatggctaagctgacaaaggaaaacaaacgcgtagttaacagcacaagagggtgcactcctcgccaac---agctggtcca |
38631645 |
T |
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| Q |
112 |
tagctgggaggtgctcacatgacctatggccactctattgtccgacaaaggtgaattagccaccagaaggctctcgacaaagatgttagaatcgctttga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38631646 |
tagctgggaggtgctcacatgacctatggccactctattgtccgacgaaggtgaattagccaccagaaggctctcgacaaagatgttagaatcgctttga |
38631745 |
T |
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| Q |
212 |
gaggtcgaggacccttcgtttgtccacagaacccataaggcacctaggatg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38631746 |
gaggtcgaggacccttcgtttgtccacagaacccataaggcacctaggatg |
38631796 |
T |
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