View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_46 (Length: 278)
Name: NF17434_low_46
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 36653478 - 36653732
Alignment:
| Q |
9 |
agcataggtaaaatcctttatagcatctctgaatgcgccaccgacaggtggcgacagcctcagaacttcagaagcaacattccaagaatatttcattttc |
108 |
Q |
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| T |
36653478 |
agcataggtaaaatcctttatagcatctctgaaagcgccaccgacaggtggcgacagcctcagaacttcagaagcaacattccaagaatatttcattttc |
36653577 |
T |
|
| Q |
109 |
tgaatatcctcccattgcaataactccccttcctctttcccttggcttatttcaagttgttctgtcatnnnnnnnnnnnnncaatttcaacatttatcct |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36653578 |
tgaatatcctcccattgcaataactcccctgcctctttcccttggcttatttcaagttgttctgtca-aaaaaagaaaaaacaatttcaacatttatcct |
36653676 |
T |
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| Q |
209 |
aatcaagtttttcgtagaagtataagnnnnnnngcaacatggtgctataaaatttt |
264 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
36653677 |
aatcaagtttttcgtaaaagtataagaaaaaaagcaacatggtgctataaaatttt |
36653732 |
T |
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