View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_49 (Length: 268)
Name: NF17434_low_49
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_49 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 268
Target Start/End: Complemental strand, 27757965 - 27757731
Alignment:
| Q |
34 |
attatactaccgtgtcttttgttgtgttggaatataaaaatatatagttaaaaatgacacatactttttacgctttgatgaactattgtggggtgcaatg |
133 |
Q |
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| T |
27757965 |
attatactaccgtgtcttttgttgtgttggaatataaaaatatatagttaaaaatgacacatactttttacgctttgatgaactattgtggggtgcaatg |
27757866 |
T |
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| Q |
134 |
ggaccaattttaatgtttttgatgagggatatagatgtttcgaaaatgtagattagttggttaaataattgaaaagtataaaataatttaaaatattaag |
233 |
Q |
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| T |
27757865 |
ggaccaattttaatgtttttgatgactgatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaga |
27757766 |
T |
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| Q |
234 |
tgaagcctatttctaccattacatatgatgtctta |
268 |
Q |
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| T |
27757765 |
tgaagtttatttataccatcaaatatgatgtctta |
27757731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 27761390 - 27761330
Alignment:
| Q |
45 |
gtgtcttttgttgtgttggaatataaaaatatat--agttaaaaatgacacatacttttta |
103 |
Q |
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| T |
27761390 |
gtgtcttttgttgagttgaaatataaaaatatatagagttgaaaatgaaacatacttttta |
27761330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 20809698 - 20809621
Alignment:
| Q |
175 |
gaaaatgtagattagttggttaaataattgaaaagtataaaataatttaaaatattaagtgaagcctatttctaccat |
252 |
Q |
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| T |
20809698 |
gaaaatatagttaagttgtttaaataattaaaaagtatgaagtaatataaaatattaagtcaagtctatttataccat |
20809621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 14947744 - 14947707
Alignment:
| Q |
194 |
ttaaataattgaaaagtataaaataatttaaaatatta |
231 |
Q |
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| T |
14947744 |
ttaaataattgaaaagtataaagtaatataaaatatta |
14947707 |
T |
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