View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_53 (Length: 256)
Name: NF17434_low_53
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 31428066 - 31428219
Alignment:
| Q |
8 |
gaaaagaacaagggatttgagaggatgatgaactgagaaagtggaagctagcaataacataatagtataactgaaaatggaattaactgcttgaatagga |
107 |
Q |
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| T |
31428066 |
gaaaagaacaagggatttgagaggatgatgaactgagaaagtggaagctagcaataacataatagtataactgaaaatggaattaactgcttgaagagga |
31428165 |
T |
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| Q |
108 |
gctggaagaagcagcacatgnnnnnnngtgagcaaaaatataatgaaattaaaa |
161 |
Q |
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| T |
31428166 |
gctggaagaagcagcacatgaaaaaaagtgagcaaaaatataatgaaattaaaa |
31428219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 31428250 - 31428333
Alignment:
| Q |
158 |
aaaatcatgtgttgaattaactcactaactacgaatgcaagacataattaaggatcaaagctttcagtaacccaccaacaggat |
241 |
Q |
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| T |
31428250 |
aaaatcatgtgttgaattaactcactaactacgaatgcaagacataattaaggatcaaagctttcagtaacccaccaacaggat |
31428333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 31452309 - 31452355
Alignment:
| Q |
190 |
gaatgcaagacataattaaggatcaaagctttcagtaacccaccaac |
236 |
Q |
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| T |
31452309 |
gaatgctagacataattaaggatcaaagctttcagtaacccatcaac |
31452355 |
T |
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