View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_54 (Length: 255)
Name: NF17434_low_54
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_54 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 5476474 - 5476232
Alignment:
| Q |
15 |
tcaagtgtttcaagtaagccaatgaaggatttatc--tcaccgccaaaaagtgaaaatatacttacagttttgttgcagataacataggtattgagctca |
112 |
Q |
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| T |
5476474 |
tcaagtgtttcaagtaagccaatgaaggatttaatattcaccgccaaaaagtgaaaatatacttacagttttgttgcagataacataggtattgagctca |
5476375 |
T |
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| Q |
113 |
aactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattga |
212 |
Q |
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| T |
5476374 |
aactttagaatatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattga |
5476275 |
T |
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| Q |
213 |
gatcttttttgatgttaaggagtgccactctctcttccttaat |
255 |
Q |
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| T |
5476274 |
gatcttttttgatgttaaggagtgccactctctcttccttaat |
5476232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 5495381 - 5495135
Alignment:
| Q |
15 |
tcaagtgtttcaagtaagccaatgaaggatttatctcaccgccaaaa------agtgaaaatatacttacagttttgttgcagataacataggtattgag |
108 |
Q |
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| T |
5495381 |
tcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaagggagacagtgaaaatatacttacagttttgatgcagataagatagggcctgag |
5495282 |
T |
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| Q |
109 |
ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca |
208 |
Q |
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| T |
5495281 |
cttaagctttaaaacatgaccagtttggttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaaagacaattggatggatct |
5495182 |
T |
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| Q |
209 |
ttgagatcttttttgatgttaaggagtgccactctctcttccttaat |
255 |
Q |
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| T |
5495181 |
ttgagatcttttttgattttaaggagtgccactctctcttccttaat |
5495135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 5484336 - 5484168
Alignment:
| Q |
87 |
tgcagataacataggtattgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatga |
186 |
Q |
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| T |
5484336 |
tgcagataagatagggcttgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaactcatga |
5484237 |
T |
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| Q |
187 |
cgaaaggcaattggaaggatcattgagatcttttttgatgttaaggagtgccactctctcttccttaat |
255 |
Q |
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| T |
5484236 |
agaaaggcaattggatggatctttgagatctattttgatgttaaggagtgccactctctcttccttaat |
5484168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 5489599 - 5489353
Alignment:
| Q |
15 |
tcaagtgtttcaagtaagccaatgaaggatttatctcaccgccaaa--aag----tgaaaatatacttacagttttgttgcagataacataggtattgag |
108 |
Q |
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| T |
5489599 |
tcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaaggaaggcgatgacagtatattaatagttttggtgcagataagataacgccggag |
5489500 |
T |
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| Q |
109 |
ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca |
208 |
Q |
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| T |
5489499 |
ctcaaacttttgaacatgaccagtttggttgtcacattctatacccttccaattacaacaatcttccccaacccatgaagaaaggcaatttgaaggatcc |
5489400 |
T |
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| Q |
209 |
ttgagatcttttttgatgttaaggagtgccactctctcttccttaat |
255 |
Q |
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| T |
5489399 |
ttgagatcttttttgattttaaggagtgccactctctcttccttaat |
5489353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 5481447 - 5481319
Alignment:
| Q |
127 |
accagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatg |
226 |
Q |
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| T |
5481447 |
accagtttgatagtcacattctataccaatccagcgacaacaatctttcccaacccatgaagaaaggcaattgtaaggatcattgagatcttttttgacg |
5481348 |
T |
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| Q |
227 |
ttaaggagtgccactctctcttccttaat |
255 |
Q |
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| T |
5481347 |
ttaaggagtgccattctctcttccttaat |
5481319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 5466684 - 5466566
Alignment:
| Q |
137 |
ttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatgttaaggagtg |
236 |
Q |
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| T |
5466684 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatctttttttatgttaaggagtg |
5466585 |
T |
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| Q |
237 |
ccactctctcttccttaat |
255 |
Q |
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| T |
5466584 |
ccaccctctcttctttaat |
5466566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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