View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_56 (Length: 251)
Name: NF17434_low_56
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5481328 - 5481101
Alignment:
| Q |
1 |
cttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtccaatgatgat |
100 |
Q |
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| T |
5481328 |
cttccttaatgcaaagagtgctaacattaaggcttttaacttcacattgagttgatgcaaaaaggaagaagagaggaataacaatatgtacactgatgat |
5481229 |
T |
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| Q |
101 |
ttttgtgctttccatcgtcccaccccaccagaggatattagatggtttcaaatttgtgattatgagcttttgacgaatggatatacatagaacaaaatgg |
200 |
Q |
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| T |
5481228 |
ttttgtgcttgccat-----catcccaccagaggatatcagatggtttcaaattggtgattacgagcttttgatgaatggatatacatagaacaagatgg |
5481134 |
T |
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| Q |
201 |
caagtagatttttggtttatttgtctctttgtt |
233 |
Q |
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| T |
5481133 |
caagtagctttttggtttatttgtctctttgtt |
5481101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5476241 - 5476006
Alignment:
| Q |
1 |
cttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtccaatgatgat |
100 |
Q |
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| T |
5476241 |
cttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtccaatgatgat |
5476142 |
T |
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| Q |
101 |
ttttgtgctttccatcgtcccaccccaccagaggatattagatggtttcaaatttgtgattatgagcttttgacgaatgga--tatacatagaacaaaat |
198 |
Q |
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| T |
5476141 |
ttttgtgcttgccat-----catcccaccagaggatatcagttggttttaaatttaccagaatgagcttttgatgaatggatgtttatatagaaccaaat |
5476047 |
T |
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| Q |
199 |
ggcaagta-gatttttggtttatttgtctctttgttatatt |
238 |
Q |
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| T |
5476046 |
ggcagttatgctttttggtttatttgtctctttgttatatt |
5476006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5466575 - 5466460
Alignment:
| Q |
1 |
cttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtccaatgatgat |
100 |
Q |
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|||| |||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| || ||||| || ||| |
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| T |
5466575 |
cttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaaaagaaagaggagagcaataacataatatccaaagacgat |
5466476 |
T |
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| Q |
101 |
ttttgtgctttccatc |
116 |
Q |
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| T |
5466475 |
tcttgtgcttgccatc |
5466460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5495144 - 5495061
Alignment:
| Q |
1 |
cttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaa |
84 |
Q |
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| T |
5495144 |
cttccttaatgcaaagagtgctaacattattgctactcactacatattgggttgatgcaaaaagaaagaagagggaaatgacaa |
5495061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5484177 - 5484144
Alignment:
| Q |
1 |
cttccttaatgcaaagagtgctaacattaaggct |
34 |
Q |
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| T |
5484177 |
cttccttaatgcaaagagtgctaacattaaggct |
5484144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5489362 - 5489329
Alignment:
| Q |
1 |
cttccttaatgcaaagagtgctaacattaaggct |
34 |
Q |
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| T |
5489362 |
cttccttaatgcaaagagtactaacattaaggct |
5489329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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