View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17434_low_59 (Length: 249)

Name: NF17434_low_59
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17434_low_59
NF17434_low_59
[»] chr5 (8 HSPs)
chr5 (19-192)||(39740159-39740344)
chr5 (12-46)||(5666805-5666839)
chr5 (205-249)||(8787479-8787523)
chr5 (205-249)||(10070089-10070133)
chr5 (205-249)||(13661948-13661992)
chr5 (205-249)||(19647679-19647723)
chr5 (205-249)||(34650835-34650879)
chr5 (205-249)||(35504243-35504286)
[»] chr7 (4 HSPs)
chr7 (205-249)||(34606401-34606445)
chr7 (12-46)||(13324932-13324966)
chr7 (205-249)||(24438617-24438661)
chr7 (205-249)||(34333423-34333467)
[»] chr3 (6 HSPs)
chr3 (205-249)||(10617286-10617330)
chr3 (205-249)||(858729-858773)
chr3 (205-249)||(4168323-4168367)
chr3 (205-249)||(43787011-43787055)
chr3 (205-249)||(46352774-46352818)
chr3 (205-249)||(52520821-52520865)
[»] chr1 (5 HSPs)
chr1 (205-249)||(3784715-3784759)
chr1 (205-249)||(38162990-38163034)
chr1 (205-249)||(18043302-18043346)
chr1 (205-249)||(29210534-29210578)
chr1 (205-249)||(38701939-38701983)
[»] scaffold0188 (1 HSPs)
scaffold0188 (205-249)||(6112-6156)
[»] chr8 (2 HSPs)
chr8 (205-249)||(10618138-10618182)
chr8 (205-249)||(34228822-34228866)
[»] chr6 (3 HSPs)
chr6 (205-249)||(392236-392280)
chr6 (205-249)||(23402278-23402322)
chr6 (205-249)||(32929510-32929554)
[»] chr4 (3 HSPs)
chr4 (205-249)||(12356384-12356428)
chr4 (205-249)||(16820992-16821036)
chr4 (205-249)||(33108675-33108719)
[»] chr2 (3 HSPs)
chr2 (205-249)||(4381935-4381979)
chr2 (205-249)||(20553071-20553115)
chr2 (205-249)||(30486350-30486394)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 39740159 - 39740344
Alignment:
Q  19 agaacattgtatcaagttttgctagcattatacttcattatttggtttaaatac---attctaaacccacaattaagtttagtcctctgatatactagta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||    
T  39740159 agaacattgtatcaagttttgctagcattatacttcattatttggtttaaatacattattctaaacccacaattaagtttagtcctctgttatactagta 39740258  T
Q  116 gat--------agataattattacacagacaaatttcaatatt-aacaaattcttgaattgaatattaaacaaattctgaaaggct 192  Q
    |||        | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39740259 gataaggactaaaataattattacacagacaaatttcaatattaaacaaattcttgaattgaatattaaacaaattctgaaaggct 39740344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 5666839 - 5666805
Alignment:
Q  12 atgaactagaacattgtatcaagttttgctagcat 46  Q
    |||||||||||||||||||||||||||||||||||    
T  5666839 atgaactagaacattgtatcaagttttgctagcat 5666805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 8787523 - 8787479
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  8787523 gtcctgctaaccggtgcccccggggcacaggttaagcataccata 8787479  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10070133 - 10070089
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||||||||||||||||||  ||||||  ||||||||||||||||    
T  10070133 gtcctgctaaccggtgctcctgggacattggttaagcataccata 10070089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 13661992 - 13661948
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||||||||||||||||   |||| ||||||||||||||||||||    
T  13661992 gtcctgctaaccggtgcctccggggcacgggttaagcataccata 13661948  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 19647679 - 19647723
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||| |||||||||||| | |||| ||||||||||||||||||||    
T  19647679 gtccggctaaccggtgcccccggggcacgggttaagcataccata 19647723  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 34650835 - 34650879
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  34650835 gtcctgctaaccggtgcccccggggcactggttaagcataccata 34650879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 35504243 - 35504286
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||    
T  35504243 gtcctgctaaccggtgcccccgg-acacgggttaagcataccata 35504286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 34606445 - 34606401
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  34606445 gtcctgctaaccggtgctcccggggcacgggttaagcataccata 34606401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 13324966 - 13324932
Alignment:
Q  12 atgaactagaacattgtatcaagttttgctagcat 46  Q
    |||||||||||||||||||||||||||||||||||    
T  13324966 atgaactagaacattgtatcaagttttgctagcat 13324932  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 24438661 - 24438617
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  24438661 gtcctgctaaccggtgcccccggggcactggttaagcataccata 24438617  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 34333467 - 34333423
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| |||||||||| |||||||||    
T  34333467 gtcctgctaaccggtgcccccggggcacgggttaaacataccata 34333423  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 10617286 - 10617330
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  10617286 gtcctgctaaccggtgcccccggggcacgggttaagcataccata 10617330  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 858773 - 858729
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||| |||||||||||| | |||| ||||||||||||||||||||    
T  858773 gtccggctaaccggtgcccccggggcacgggttaagcataccata 858729  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 4168367 - 4168323
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | ||||  |||||||||||||||||||    
T  4168367 gtcctgctaaccggtgcccccggggtacgggttaagcataccata 4168323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 43787055 - 43787011
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  43787055 gtcctgctaaccggtgcccccggggcactggttaagcataccata 43787011  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 46352818 - 46352774
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||||||||||||||||   |||| ||||||||||||||||||||    
T  46352818 gtcctgctaaccggtgcctccggggcacgggttaagcataccata 46352774  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 52520865 - 52520821
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  52520865 gtcctgctaaccggtgcccccggggcactggttaagcataccata 52520821  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 3784715 - 3784759
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||| |||||||||||| | |||||||||||||||||||||||||    
T  3784715 gtccggctaaccggtgcccccgggacacgggttaagcataccata 3784759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 38163034 - 38162990
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  38163034 gtcctgctaaccggtgcccccggggcacgggttaagcataccata 38162990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 18043346 - 18043302
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  18043346 gtcctgctaaccggtgcccccggggcactggttaagcataccata 18043302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 29210578 - 29210534
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  29210578 gtcctgctaaccggtgcccccggggcactggttaagcataccata 29210534  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 38701939 - 38701983
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  38701939 gtcctgctaaccggtgccctcggggcactggttaagcataccata 38701983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 6112 - 6156
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| |||||||||| |||||||||    
T  6112 gtcctgctaaccggtgcccccggggcacgggttaaacataccata 6156  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10618182 - 10618138
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| |  | ||||||||||||||||||||||    
T  10618182 gtcctgctaaccggtgccccggagacacgggttaagcataccata 10618138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 34228866 - 34228822
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  34228866 gtcctgctaaccggtgcccccggggcactggttaagcataccata 34228822  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 392280 - 392236
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  392280 gtcctgctaaccggtgcccccggggcactggttaagcataccata 392236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 23402322 - 23402278
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||||||||||||||||   |||| ||||||||||||||||||||    
T  23402322 gtcctgctaaccggtgcctccggggcacgggttaagcataccata 23402278  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 32929510 - 32929554
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  32929510 gtcctgctaaccggtgcccccggggcactggttaagcataccata 32929554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 12356428 - 12356384
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | ||| |||| ||||||||||||||||    
T  12356428 gtcctgctaaccggtgcccccggaacactggttaagcataccata 12356384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 16821036 - 16820992
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  16821036 gtcctgctaaccggtgcccccggggcactggttaagcataccata 16820992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 33108675 - 33108719
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||||||||||||||||   |||| ||||||||||||||||||||    
T  33108675 gtcctgctaaccggtgcctccggggcacgggttaagcataccata 33108719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 4381979 - 4381935
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    |||||||||||| |||||| |||| ||| ||||||||||||||||    
T  4381979 gtcctgctaaccagtgctcccggggcactggttaagcataccata 4381935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 20553115 - 20553071
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  20553115 gtcctgctaaccggtgcccccggggcactggttaagcataccata 20553071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 30486394 - 30486350
Alignment:
Q  205 gtcctgctaaccggtgctcacgggacacgggttaagcataccata 249  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  30486394 gtcctgctaaccggtgcccccggggcactggttaagcataccata 30486350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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