View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_6 (Length: 528)
Name: NF17434_low_6
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 225 - 514
Target Start/End: Original strand, 43062886 - 43063175
Alignment:
| Q |
225 |
aaaccgcatggtgaattatctgaagctatgtttcacagatatgaattgtggaccaatagtcatcatgttttcactattccttctgttaacgttcacatgc |
324 |
Q |
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| T |
43062886 |
aaaccgcatggtgaattatctgaagctatgtttcacagatatgaattgtggaccaataatcatcatgttttcactattccttctgttaatgtagatatgc |
43062985 |
T |
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| Q |
325 |
aaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
424 |
Q |
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| T |
43062986 |
aaagatattggatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
43063085 |
T |
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| Q |
425 |
attgcaaaaagaagcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatc |
514 |
Q |
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| T |
43063086 |
attgcaaaaagaagcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatc |
43063175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 43062689 - 43062883
Alignment:
| Q |
3 |
catagggactttctttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatcatgttatgatactgatcatagattcatagggactt |
102 |
Q |
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| T |
43062689 |
catagggactttctttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatcatgttatgatactgatcatagattcatagggactt |
43062788 |
T |
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| Q |
103 |
tctgagaaaaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaa |
197 |
Q |
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| T |
43062789 |
tctgagaaaaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaa |
43062883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 43184178 - 43184082
Alignment:
| Q |
325 |
aaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
424 |
Q |
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| T |
43184178 |
aaagatattggatacatgtttgagaatcttataataaggatgaccta-------tatagtgccaaagttcaaaagaattggaattacaagtattagacac |
43184086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 40179145 - 40179058
Alignment:
| Q |
111 |
aaatgcactgtccattttggattgaactggtagtgctgttttattttcgaccaatttgattgatgttctcattagccaattcctcaaaa |
199 |
Q |
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| T |
40179145 |
aaatgcactttccattttggattgaactggtagtcctattttattct-gtccaatttgattgatgttctcattagccaattccacaaaa |
40179058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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