View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17434_low_60 (Length: 247)
Name: NF17434_low_60
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_60 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 37211690 - 37211831
Alignment:
| Q |
99 |
tgacatcttttactctttgagatgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaactt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211690 |
tgacatcttttactctttgagatgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaactt |
37211789 |
T |
|
| Q |
199 |
ctctgacaattccttcaacttctcagacactttcttcatctc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37211790 |
ctctgacaattccttcaacttctcagacactttcttcttctc |
37211831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 37211464 - 37211564
Alignment:
| Q |
1 |
attcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacactttgccaccaaattccacgagtaattgttcaagtcacgcatgcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211464 |
attcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacactttgccaccaaattccacgagtaattgttcaagtcacgcatgcatg |
37211563 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
37211564 |
a |
37211564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 37217393 - 37217487
Alignment:
| Q |
120 |
atgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaacttctctgacaattccttc |
214 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||| |
|
|
| T |
37217393 |
atgtcttggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatcacatacaactttcaacttctctgaaagttccttc |
37217487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37202093 - 37202148
Alignment:
| Q |
1 |
attcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacactt |
56 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
37202093 |
attcatatggaaattcaaatcactatgcataaatacttggctataatcttacactt |
37202148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 37180252 - 37180313
Alignment:
| Q |
149 |
gtcaatctctctttccaatcagcctctttatcacatattgctttcaacttctctgacaattc |
210 |
Q |
| |
|
|||||||| ||||| ||| ||| ||||||| |||||||| ||| ||| |||||||||||||| |
|
|
| T |
37180252 |
gtcaatctttctttgcaagcagtctctttaacacatatttcttccaaattctctgacaattc |
37180313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 414793 - 414696
Alignment:
| Q |
1 |
attcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacac-tttgccaccaaa-ttccacgagtaattgttcaagtcacgcatg |
96 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| | |||||||||||| ||| | |||||| |||||| ||||| ||||||||||| ||||| |
|
|
| T |
414793 |
attcatatgaagattcaaatcaccatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatg |
414696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University