View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17434_low_63 (Length: 233)

Name: NF17434_low_63
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17434_low_63
NF17434_low_63
[»] chr4 (2 HSPs)
chr4 (106-198)||(10167895-10167987)
chr4 (1-41)||(10167790-10167830)
[»] chr6 (2 HSPs)
chr6 (106-196)||(24317483-24317573)
chr6 (113-198)||(25438375-25438460)
[»] chr3 (1 HSPs)
chr3 (113-198)||(5410837-5410922)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 10167895 - 10167987
Alignment:
Q  106 ggttcatttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattggg 198  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10167895 ggttcacttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattggg 10167987  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10167790 - 10167830
Alignment:
Q  1 ctctccctccctccattgcttcactattcatctgttcacta 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10167790 ctctccctccctccattgcttcactattcatctgttcacta 10167830  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 24317483 - 24317573
Alignment:
Q  106 ggttcatttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattg 196  Q
    |||||| ||||||||||| | ||||| |||||| |||||| | ||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  24317483 ggttcaattcttaaaacccataaatccttaactcttaactttaattgttttcatgtactgggtttaagaaatttgggagaaattgaaattg 24317573  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 25438375 - 25438460
Alignment:
Q  113 ttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattggg 198  Q
    ||||||||||||| |||||  ||||| |||||| | ||||||||||||| ||| | ||||||||||||||  ||||||||||||||    
T  25438375 ttcttaaaacctataaatcggtaactcttaactttaattgttttcatttactgtgtttaagaaatttgggaaaaattgaaattggg 25438460  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 5410922 - 5410837
Alignment:
Q  113 ttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattggg 198  Q
    ||||||||||| | |||||  ||||| |||||| | ||||||||||||| ||| | ||||||||||||||  ||||||||||||||    
T  5410922 ttcttaaaacccataaatcggtaactcttaactttaattgttttcatttactgtgtttaagaaatttgggaaaaattgaaattggg 5410837  T

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