View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17434_low_64 (Length: 230)
Name: NF17434_low_64
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_64 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0216 (1 HSPs) |
| | |
|
| [»] scaffold0239 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 29708527 - 29708316
Alignment:
| Q |
12 |
gagatgaacttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtttttgttcgatggacgaggggatctcg------ |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29708527 |
gagatggacttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtctttgttcgatggacgaggggatctcgaaagca |
29708428 |
T |
|
| Q |
106 |
-ttatttctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaa |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29708427 |
gttatttctccggataaggtcaagtgttctaacggctatattcgatatttagattgtatggctaggattaggtagttttttctacagttatagtttttaa |
29708328 |
T |
|
| Q |
205 |
actaggtagtta |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29708327 |
actaggtagtta |
29708316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 41439104 - 41438992
Alignment:
| Q |
105 |
gttatttctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaa |
204 |
Q |
| |
|
||||||| ||||||||||||||| || |||| |||||||||||| |||||| ||||||||||||||||||||| |||||| || |||||||||| | |
|
|
| T |
41439104 |
gttatttttccggataaggtcaagcatttcaacggctatattcgatacttagatcgtatggctaggattaggtagt-ttttctgcagttatagttttcat |
41439006 |
T |
|
| Q |
205 |
actaggtagttatt |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41439005 |
actaggtagttatt |
41438992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 22064465 - 22064576
Alignment:
| Q |
105 |
gttatttctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaa |
204 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||||||||| | || | ||||||| |||||||||| |||||||||||| || || || |
|
|
| T |
22064465 |
gttatttctgtggataaggtcaaatgtcgtaacggctatattcgatattcaaatcgaatggctaagattaggtag--ttttctacaattctaacgttaaa |
22064562 |
T |
|
| Q |
205 |
actaggtagttatt |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22064563 |
actaggtagttatt |
22064576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 31817703 - 31817905
Alignment:
| Q |
21 |
ttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtttttgttcgatggacgaggggatctcg-------ttatttct |
113 |
Q |
| |
|
|||||||||||| || ||||||| || | ||||||||||||||||||||| ||||| || |||||||||| |||||||||||| |||||| | |
|
|
| T |
31817703 |
ttgaccttgcatcttttatcgaaattgcgctccttggaagagaatcgaagacgcgcgcttctgttcgatgggagaggggatctcgaaagcagttattttt |
31817802 |
T |
|
| Q |
114 |
ccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaaactaggtag |
213 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||||||||||| |||||| || |||||||||| ||||||||||| |
|
|
| T |
31817803 |
ccggataaggtcaagtgttccaacggctatattcgatatttagatcgtatgactaggattaggtag--ttttctgcagttatagttttcaaactaggtag |
31817900 |
T |
|
| Q |
214 |
ttatt |
218 |
Q |
| |
|
||||| |
|
|
| T |
31817901 |
ttatt |
31817905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 22880829 - 22880896
Alignment:
| Q |
116 |
ggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagtttt |
183 |
Q |
| |
|
|||||||||||| || || ||| ||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
22880829 |
ggataaggtcaagtgctcaaactactatattcgatatttaaatcgtatggctaagattaggtagtttt |
22880896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 16664932 - 16664849
Alignment:
| Q |
116 |
ggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttt |
201 |
Q |
| |
|
|||||||||||| || || |||| |||||||||||||| | || ||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
16664932 |
ggataaggtcaagtgctcaaacggctatattcgatattcaaatcgtatggctaagattaggtag--ttttctacagttatagtttt |
16664849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 23511394 - 23511599
Alignment:
| Q |
19 |
acttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtttttgttcgatggacgaggggatctc-------gttattt |
111 |
Q |
| |
|
|||||||||||||| || |||||||||| | ||||||||||||||||||||| ||||| | |||||||||| ||| |||||||| ||||||| |
|
|
| T |
23511394 |
acttgaccttgcat-ttctatcgaagttgcgctccttggaagagaatcgaagacgcgcgcctctgttcgatgggcgaagggatctctaaagcggttattt |
23511492 |
T |
|
| Q |
112 |
ctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagttttt-aaactagg |
210 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||||| | || | ||||||| |||||||||| ||||||| || ||||||||||| |||||||| |
|
|
| T |
23511493 |
ttccggatacggtcaagtgttcaaacgactatattcgatattcaaatcggatggctaagattaggtag-tttttctgcagttatagtttttaaaactagg |
23511591 |
T |
|
| Q |
211 |
tagttatt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
23511592 |
tagttatt |
23511599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 21137439 - 21137645
Alignment:
| Q |
19 |
acttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtttttgttcgatggacgaggggatctcg-------ttattt |
111 |
Q |
| |
|
|||||| ||||||| || |||||||||| | ||||||| ||||||||||||| ||||| | ||||||||| ||||||||| ||| ||| || |
|
|
| T |
21137439 |
acttgatcttgcat-ttctatcgaagttgcgctccttggtagagaatcgaagacgcgcgcctctgttcgatgaccgaggggatttcgaaggcagttactt |
21137537 |
T |
|
| Q |
112 |
ctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagttttt--aaactag |
209 |
Q |
| |
|
| ||||||||||||| ||||| || | |||||||||||||| | || |||||||||||||||||||| ||||||| || ||||||||||| ||||||| |
|
|
| T |
21137538 |
ttacggataaggtcaagtgttcaaatggctatattcgatattcaaatcgtatggctaggattaggtag-tttttctgcagttatagttttttcaaactag |
21137636 |
T |
|
| Q |
210 |
gtagttatt |
218 |
Q |
| |
|
||| ||||| |
|
|
| T |
21137637 |
gtatttatt |
21137645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 21076445 - 21076549
Alignment:
| Q |
116 |
ggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttt--tctacaattatagtttttaaactaggtag |
213 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| |||| || | |||||| ||||||||||||||| || || |||||||||| ||| ||||||| |
|
|
| T |
21076445 |
ggataaggtcaagtgttttaacggctatattcgatgtttaaatcgaatggctgtgattaggtagttttttatccgcagttatagttttaaaattaggtag |
21076544 |
T |
|
| Q |
214 |
ttatt |
218 |
Q |
| |
|
||||| |
|
|
| T |
21076545 |
ttatt |
21076549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 37272 - 37066
Alignment:
| Q |
19 |
acttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtttttgttcgatggacgaggggatctcg-------ttattt |
111 |
Q |
| |
|
|||||||||||||| || ||| |||||| | ||||||||||||||||||||| ||||| | || ||||||| ||| ||||||||| |||||| |
|
|
| T |
37272 |
acttgaccttgcat-ttctattgaagttgcgctccttggaagagaatcgaagacgcgcgcctctggtcgatgggcgaagggatctcgaaagcggttattt |
37174 |
T |
|
| Q |
112 |
ctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagttttt-aaactagg |
210 |
Q |
| |
|
| |||||||||||| ||||| ||||||||||||||||||| | || |||||||||||||||||||| || |||| || ||||||||||| |||||| | |
|
|
| T |
37173 |
ttttggataaggtcaagtgttcaaacgactatattcgatattcaaatcgtatggctaggattaggtag-ttcttctgcagttatagtttttcaaactatg |
37075 |
T |
|
| Q |
211 |
tagttattg |
219 |
Q |
| |
|
| ||||||| |
|
|
| T |
37074 |
ttgttattg |
37066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 12844926 - 12844715
Alignment:
| Q |
13 |
agatgaacttgaccttgcatgttatatcgaagttatgttccttggaagagaatcgaagatgcgcgtttttgttcgatggacgaggggatctcg------- |
105 |
Q |
| |
|
||||| ||||||||||||| || |||||||| ||| |||||||||||||||||||||||||| | |||||||| | | ||||| ||| |
|
|
| T |
12844926 |
agatggacttgaccttgcaatttttatcgaagatatcttccttggaagagaatcgaagatgcgtgccccgtttcgatgggcaaagggatttcgaaagtag |
12844827 |
T |
|
| Q |
106 |
ttatttctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaaa |
205 |
Q |
| |
|
||| | ||||||||||||||| |||||||||| ||||||||||||||| || | ||||||| |||||| ||| ||||||| | |||||||||| ||| |
|
|
| T |
12844826 |
ttactcctccggataaggtcatgtgttctaacggttatattcgatatttaaatcgaatggctatgattagttag-tttttctgccgttatagttttaaaa |
12844728 |
T |
|
| Q |
206 |
ctaggtagttatt |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12844727 |
ctaggtagttatt |
12844715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 12021716 - 12021636
Alignment:
| Q |
105 |
gttatttctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagtttttt |
185 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||||||||||||| | || ||||||| |||||||||||||||| |
|
|
| T |
12021716 |
gttatttctttggataaggtcaaatgtcctaacggctatattcgatattcaaatcaaatggctatgattaggtagtttttt |
12021636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 13023791 - 13023860
Alignment:
| Q |
112 |
ctccggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagtt |
181 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||| |||| || | |||||| || ||||||||| |
|
|
| T |
13023791 |
ctccggataaggttaaatgttttaacggctatattcgatgtttaaatcgaatggctgtgactaggtagtt |
13023860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 20216 - 20117
Alignment:
| Q |
117 |
gataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaaactaggtagtta |
216 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| | || | ||||||| ||||||||||||||| | || |||||||||| | |||||||||||| |
|
|
| T |
20216 |
gataaggtcaaatgtcctaacggctatattcgatattcaaatcgaatggctatgattaggtagttttt--tgcagttatagttttgacactaggtagtta |
20119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0239 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 17240 - 17140
Alignment:
| Q |
116 |
ggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagttttttctacaattatagtttttaaactaggtagtt |
215 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||||||| | |||| ||| ||| |||||||||| |||||| || ||||||| || |||||||||| || |
|
|
| T |
17240 |
ggataaagtcaaatgacctaacggctatattcgatattcaaattgaatgactatgattaggtag--ttttctgcagttatagtgttaaaactaggtaatt |
17143 |
T |
|
| Q |
216 |
att |
218 |
Q |
| |
|
||| |
|
|
| T |
17142 |
att |
17140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 11989643 - 11989576
Alignment:
| Q |
116 |
ggataaggtcaaatgttctaacgactatattcgatatttagattgtatggctaggattaggtagtttt |
183 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| | || | ||||||| ||||| ||||||| |
|
|
| T |
11989643 |
ggataaggtcaaatgttgtaacggctatattcgatattcaaatcgaatggctatgattatatagtttt |
11989576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 14022679 - 14022574
Alignment:
| Q |
115 |
cggataaggtcaaatgttct-aacgactatattcgatatttagattgtatggctaggattaggtagttttttct--acaattatagtttttaaactaggt |
211 |
Q |
| |
|
||||||||||||| |||| | |||| ||| ||||||| |||| || | |||||| |||||||||||||||| | ||| |||||||||| ||||||||| |
|
|
| T |
14022679 |
cggataaggtcaagtgtttttaacggcta-attcgatgtttaaatcgaatggctgtgattaggtagttttttatcaacagttatagttttaaaactaggt |
14022581 |
T |
|
| Q |
212 |
agttatt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
14022580 |
agttatt |
14022574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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