View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_69 (Length: 218)
Name: NF17434_low_69
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_69 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10327693 - 10327478
Alignment:
| Q |
1 |
gctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaaccaacaatttgaggggataatttatcaataaaaattacaga |
100 |
Q |
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| T |
10327693 |
gctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaatcaacaattcgaggggacaatttatcaataaaattta--ga |
10327596 |
T |
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| Q |
101 |
ggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttgaacacaactaaagaaataacc |
200 |
Q |
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| T |
10327595 |
ggatatgcatgccatgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttgtacacaactaaagaaataacc |
10327496 |
T |
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| Q |
201 |
gcaaaattatcgaagcac |
218 |
Q |
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| T |
10327495 |
gcaaaattatcgaagcac |
10327478 |
T |
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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23645519 - 23645735
Alignment:
| Q |
1 |
gctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaaccaacaatttgaggggataatttatcaataaaaattacaga |
100 |
Q |
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| T |
23645519 |
gctcttttgcacaagtgctttcgcctgcggccgtggttaagagtgtatttcttcctcaaccgacaattcgaggggataatttatcaataaaaatcacaga |
23645618 |
T |
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| Q |
101 |
ggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaag-ttgaacacaactaaagaaataac |
199 |
Q |
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| T |
23645619 |
gaatgtctatgtcacgcggttaaagaaatgcaagcatcatatgcacgaccagctattcatgaacaagggtgacaagcccgtacacaactaaagaagtaac |
23645718 |
T |
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| Q |
200 |
cgcaaaattatcgaagc |
216 |
Q |
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| T |
23645719 |
cccaaaattatcgaagc |
23645735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 23869822 - 23869679
Alignment:
| Q |
71 |
aggggataatttatcaataaaaattacagaggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggt |
170 |
Q |
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| T |
23869822 |
aggggataatttatcaataaaaattacagagaatgtctatctcatggggttagataaatcaaagtatcatatgcacgaccggatattcttgaacaggggt |
23869723 |
T |
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| Q |
171 |
gacaagttgaacacaactaaagaaataaccgcaaaattatcgaa |
214 |
Q |
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| T |
23869722 |
gacaagccgtacacagctaaataaataaccgcaaaattatcgaa |
23869679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 17704815 - 17704918
Alignment:
| Q |
115 |
tgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttgaacacaactaaagaaataaccgcaaaattatcgaa |
214 |
Q |
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| T |
17704815 |
tggggttagagaaatgcaagcataatatgcacggccgactattcttgaacaagggtgacaagccgtacacaactaaagaaataaccaaaaaattatcgca |
17704914 |
T |
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| Q |
215 |
gcac |
218 |
Q |
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|||| |
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| T |
17704915 |
gcac |
17704918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 28667256 - 28667380
Alignment:
| Q |
51 |
cttccttaaccaacaatttgaggggataatttatcaataaaaattacagaggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgacc |
150 |
Q |
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| T |
28667256 |
cttcctcaaccgacaattcgtggggattatctgtcaataaaaattaccgacgaagtgtatgccaaaggattagagaaatgcaagcaccacatgcacgaca |
28667355 |
T |
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| Q |
151 |
ggctattcttgtacaagggtgacaa |
175 |
Q |
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| T |
28667356 |
ggttgttcttgaacaagggcgacaa |
28667380 |
T |
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