View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_low_7 (Length: 500)
Name: NF17434_low_7
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 35902221 - 35902705
Alignment:
| Q |
1 |
tcaaaatgataaaatacaaataatattacatataatacacaaaacaggatgggtgaacttgatttctctgccttc----acatcagagttctacatgata |
96 |
Q |
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| T |
35902221 |
tcaaaatgataaaatacaaataatattacatataatacacaaaacaggatgggtaaacttgatttctctgccttcttatacatcagagttctacatgata |
35902320 |
T |
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| Q |
97 |
ccacatacaataatctatttaagtactgtatacttacaaaacagtcctcaaagtttgtattgcaatctagaatagaatagtactctagcttccttgaagt |
196 |
Q |
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| T |
35902321 |
ctacatacaataatctatttaagtactgtatacttacaaaacagtcctcaaagtttgtattgcaatctagaatagaatggtactctagcttccttgaagt |
35902420 |
T |
|
| Q |
197 |
tgaagcaaaaagctcctttcctacaacaaaataacggcctcaagtagttctacttccttttatcttctattgctattttcctttctaagaaatggactgc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
35902421 |
tgaagcaaaaagctcctttcctacaacaaaataacggcctcaagtagttctacttccttttatcttctattactattttcctttctaagaaattgactgc |
35902520 |
T |
|
| Q |
297 |
tatccaatatccatactagatttcactttcacattgcactgttacattgaagcttgcaatttcatctctgttatttgcttgaccattacatactgttgct |
396 |
Q |
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| T |
35902521 |
tatccaatatccatactagatttcactttcacattgcactgttacattgaagcttgcaatttcatctctgttatttgcttgaccattacatactgttgct |
35902620 |
T |
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| Q |
397 |
gtcgcggactgctgctgcttctgtcacggcctactgctgacttccgggtctgctacagctgctattgcggaattatgatgcttct |
481 |
Q |
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| T |
35902621 |
gtcgcggactgctgctgcttctgtcacggcctactgctgacttccgggtctgctacagctgctattgcggaattatgatgcttct |
35902705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 35903731 - 35903943
Alignment:
| Q |
6 |
atgataaaatacaaataatattacatataatacacaaaacaggatgggtgaacttgatttctctgcc----ttcacatcagagttctacatgataccaca |
101 |
Q |
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|||||| |||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||| | |||||| | ||||||| || |
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| T |
35903731 |
atgatataatacagataatattacatataatacacaaagaaggctggacgaacttgatttctctgcctctttgtacatcaaaattctacagacta----t |
35903826 |
T |
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| Q |
102 |
tacaataatctatttaagtactgtatacttacaaaacagtcctcaaagtttgtattgcaatctagaatagaatagtactctagcttccttgaagttgaag |
201 |
Q |
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|||||||||||||||||||| |||||||| ||| || ||||||||||||||||| | ||||| ||| ||||||||||||||| ||||||| |
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| T |
35903827 |
tacaataatctatttaagtattgtatactctaaaagtagccctcaaagtttgtattgtactctag--------agttctctagcttccttgacgttgaag |
35903918 |
T |
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| Q |
202 |
caaaaagctcctttcctacaacaaaa |
227 |
Q |
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||||||||| ||| |||||||||||| |
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| T |
35903919 |
caaaaagct-cttccctacaacaaaa |
35903943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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