View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17434_low_8 (Length: 487)

Name: NF17434_low_8
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17434_low_8
NF17434_low_8
[»] chr3 (3 HSPs)
chr3 (78-476)||(44187643-44188059)
chr3 (19-56)||(45205341-45205378)
chr3 (14-55)||(51698924-51698965)
[»] chr1 (4 HSPs)
chr1 (78-393)||(43095837-43096160)
chr1 (14-57)||(41677289-41677332)
chr1 (20-57)||(15470027-15470064)
chr1 (14-42)||(48470717-48470745)
[»] chr2 (1 HSPs)
chr2 (78-476)||(32726786-32727186)
[»] chr7 (3 HSPs)
chr7 (15-70)||(49069300-49069355)
chr7 (15-56)||(46095015-46095056)
chr7 (25-57)||(3683595-3683627)
[»] chr4 (2 HSPs)
chr4 (14-57)||(26732288-26732331)
chr4 (20-57)||(31559602-31559639)
[»] chr8 (2 HSPs)
chr8 (19-57)||(28756599-28756637)
chr8 (21-74)||(6237803-6237856)
[»] chr5 (1 HSPs)
chr5 (15-57)||(7287155-7287197)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 78 - 476
Target Start/End: Original strand, 44187643 - 44188059
Alignment:
Q  78 tttttatcatcttgactttgatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattct 169  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||        ||| ||||||||||| ||||||||||||||||||||||||    
T  44187643 tttttatcatcttggctttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatctatgattct 44187742  T
Q  170 tttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggatcgtttggatccataattgtggc 269  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  44187743 tttgatccttagtgttttgtccttcccatggccttgaagccatccatctatcaagccaattccatctccaatggggattgtttggatccataattgtggc 44187842  T
Q  270 atctgtaggttttgaagagttcctctatatttgctgttagagaaattaagctataggttattatccatataaaactatttcatgtttgcttatgataaac 369  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44187843 atctgtaggttttgaagagttcctccatgtttgctgttagagaaattaagctataggttattatccatat-aaactatttcatgtttgcttatgataaac 44187941  T
Q  370 cttaaatgaataacttatatgtatagtgtaatcag-----------aatagtcaattacataactgcttagttagaaatcgtagaatatgatgtagcgaa 458  Q
    ||||||||||||| ||||| ||| |||||||||||           || |||||||||||| |||||||||||| |||||||| ||||||||||||||||    
T  44187942 cttaaatgaataaattataagtacagtgtaatcagaactgccaataaacagtcaattacatgactgcttagttaaaaatcgtaaaatatgatgtagcgaa 44188041  T
Q  459 ttgaagagttgcgattga 476  Q
    |||||||||||| |||||    
T  44188042 ttgaagagttgcaattga 44188059  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 45205378 - 45205341
Alignment:
Q  19 gaaaccaaaacaatagagagagaagataaaaatataat 56  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  45205378 gaaaccaaaacaatagagagagaaattaaaaatataat 45205341  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 51698965 - 51698924
Alignment:
Q  14 gcacagaaaccaaaacaatagagagagaagataaaaatataa 55  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  51698965 gcacaaaaaccaaatcaatagagagagaaaataaaaatataa 51698924  T

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Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 78 - 393
Target Start/End: Complemental strand, 43096160 - 43095837
Alignment:
Q  78 tttttatcatcttgactttgatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattct 169  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||        ||| |||||||||||||||||||| |||||||||||||||    
T  43096160 tttttgtcatcttgattttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatctatgattct 43096061  T
Q  170 tttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggatcgtttggatccataattgtggc 269  Q
    | ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43096060 tctgatctttagtgttttgtccttcccatggccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc 43095961  T
Q  270 atctgtaggttttgaagagttcctctatatttgctgttagagaaattaagctataggttattatccatataaaactatttcatgtttgcttatgataaac 369  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||     
T  43095960 atctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttatatgttattatccatataaaactatttcatgtttgcttatcataaat 43095861  T
Q  370 cttaaatgaataacttatatgtat 393  Q
    |||||| |||||| ||||||||||    
T  43095860 cttaaaggaataaattatatgtat 43095837  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 41677289 - 41677332
Alignment:
Q  14 gcacagaaaccaaaacaatagagagagaagataaaaatataatg 57  Q
    ||||| |||||||||||||||||||| || ||||||||||||||    
T  41677289 gcacaaaaaccaaaacaatagagagataaaataaaaatataatg 41677332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 15470027 - 15470064
Alignment:
Q  20 aaaccaaaacaatagagagagaagataaaaatataatg 57  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  15470027 aaaccaaaacaatagagagagaaaataaaaagataatg 15470064  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 48470745 - 48470717
Alignment:
Q  14 gcacagaaaccaaaacaatagagagagaa 42  Q
    |||||||||||||||||||||||||||||    
T  48470745 gcacagaaaccaaaacaatagagagagaa 48470717  T

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Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 78 - 476
Target Start/End: Original strand, 32726786 - 32727186
Alignment:
Q  78 tttttatcatcttgacttt-gatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattc 168  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||        ||| ||||||||||| |||||||||||||||||||||||    
T  32726786 tttttatcatctttacttttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatctatgattc 32726885  T
Q  169 ttttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggatcgtttggatccataattgtgg 268  Q
    |||||||| ||||||||||||| ||||||| ||||||||||                |||||||||| ||||||||||| |||||||||||||| ||| |    
T  32726886 ttttgatccttagtgttttgtccttcccatggccttgaagc----------------caattccatctccaatggggattgtttggatccataactgtag 32726969  T
Q  269 catctgtaggttttgaagagttcctctatatttgctgttagagaaattaagctataggttattatccatataaaactatttcatgtttgcttatgataaa 368  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32726970 catctgtaggttttgaagggttcctccatgtttgctgttagagaaattaagctataggttattatccatat-aaactatttcatgtttgcttatgataaa 32727068  T
Q  369 ccttaaatgaataacttatatgtatagtgtaatcag----------aatagtcaattacataactgcttagttagaaatcgtagaatatgatgtagcgaa 458  Q
    |||||||||||||| ||||| |||||||||||||||          || |||||||||||| |||||||||||| |||||||| ||||||||||||| ||    
T  32727069 ccttaaatgaataaattataagtatagtgtaatcagaactgccaataacagtcaattacatgactgcttagttaaaaatcgtaaaatatgatgtagcaaa 32727168  T
Q  459 ttgaagagttgcgattga 476  Q
    |||||||||||| |||||    
T  32727169 ttgaagagttgcaattga 32727186  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 49069355 - 49069300
Alignment:
Q  15 cacagaaaccaaaacaatagagagagaagataaaaatataatggatatctgagaga 70  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| | || |||||||    
T  49069355 cacaaaaaccaaaacaatagagagagaaaataaaaacataatgtaaatatgagaga 49069300  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 46095056 - 46095015
Alignment:
Q  15 cacagaaaccaaaacaatagagagagaagataaaaatataat 56  Q
    |||| ||||||| ||||||||||||||| |||||||||||||    
T  46095056 cacaaaaaccaatacaatagagagagaaaataaaaatataat 46095015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 3683627 - 3683595
Alignment:
Q  25 aaaacaatagagagagaagataaaaatataatg 57  Q
    |||||||||||||||||| ||||||||||||||    
T  3683627 aaaacaatagagagagaaaataaaaatataatg 3683595  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 26732331 - 26732288
Alignment:
Q  14 gcacagaaaccaaaacaatagagagagaagataaaaatataatg 57  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||    
T  26732331 gcacaaaaaccaaaacaatagagagagaaaataaaaagataatg 26732288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 31559639 - 31559602
Alignment:
Q  20 aaaccaaaacaatagagagagaagataaaaatataatg 57  Q
    |||||||||||||||||||||||  |||||||||||||    
T  31559639 aaaccaaaacaatagagagagaaagtaaaaatataatg 31559602  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 28756637 - 28756599
Alignment:
Q  19 gaaaccaaaacaatagagagagaagataaaaatataatg 57  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  28756637 gaaaccaaaacaatagagagaaaaaataaaaatataatg 28756599  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 6237803 - 6237856
Alignment:
Q  21 aaccaaaacaatagagagagaagataaaaatataatggatatctgagagaaaat 74  Q
    ||||||| |||||||||||||| |||||||||||||| | || ||| |||||||    
T  6237803 aaccaaagcaatagagagagaaaataaaaatataatgtaaatatgaaagaaaat 6237856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 7287155 - 7287197
Alignment:
Q  15 cacagaaaccaaaacaatagagagagaagataaaaatataatg 57  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  7287155 cacaaaaaccaaaacaatagagagagaaagtaaaaatataatg 7287197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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