View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17434_low_9 (Length: 481)
Name: NF17434_low_9
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 26410396 - 26410853
Alignment:
| Q |
19 |
ctcaccgccgccatatcccgctacacaaacctcatcaaaacagaacacaaccatcccttaatcccaccaaaaacaaacctctcaaacaatctaccacctc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26410396 |
ctcaccgccgccatatctcgctacacaaacctcatcaaaacagaacacaaccatcccttaatcccaccaaaaacaaacctctcaaacaatctaccacctc |
26410495 |
T |
|
| Q |
119 |
ttcaaaccctaacaataaccataacaaacccaaacacagaactaaaccacgccaccgacgaatcctacacgttaataatcacaactcccaccgccacctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26410496 |
ttcaaaccctaacaataaccataacaaacccaaacacagaactaaaccacgccaccgacgaatcctacacgttaataatcacaactcccaccgccacctt |
26410595 |
T |
|
| Q |
219 |
aaccgccgtaacttcatggggagccatgcatggtttagaaacattctcacagcttgcatggggaaacccaacgcgcgtagctgtgaacgtgcgtgttaac |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26410596 |
aaccgctgtaacttcatggggagccatgcatggtttagaaacattctcacagcttgcatggggaaacccaacgcgcgtggctgtgaacgtgcgtgttaac |
26410695 |
T |
|
| Q |
319 |
gacgcgccgttgttcggtcatcgcggtatcatgttagatacttcaagaaactactatccagtgaaggatttgttaagaactattgaagctatgagtatga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26410696 |
gacgcgccgttgttcggtcatcgcggtattatgttagatacttcaagaaactactatccagtgaaggatttgttaagaactattgaagctatgagtatga |
26410795 |
T |
|
| Q |
419 |
ataagttgaatgtgtttcattggcatgtaactgattctcattcttttcctttgcttct |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26410796 |
ataagttgaatgtgtttcattggcatgtaactgattctcattcttttcctttgattct |
26410853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University