View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17435_high_1 (Length: 665)

Name: NF17435_high_1
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17435_high_1
NF17435_high_1
[»] chr2 (1 HSPs)
chr2 (13-657)||(8795325-8795969)


Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 13 - 657
Target Start/End: Original strand, 8795325 - 8795969
Alignment:
Q  13 catcaatacctgcatacacaaaaatatacataatgatgacaacacatatgatcacactagctatatgaaataatacaaattaataaaatattccatctat 112  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8795325 catctatacctgcagacacaaaaatatacataatgatgacaacacatataatcacactagctatatgaaataatacaaattaataaaatattccatctat 8795424  T
Q  113 agggagtagtgtttacacggaaccttgatgagacaaatgagaaaaagaagcaagagaacaaatcaatcaaattcatcattattcttaaggacctactaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8795425 agggagtagtgtttacacggaaccttgatgagacaaatgagaaaaagaagcaagagaacaaatcaatcaaattcatcattattcttaaggacctactaac 8795524  T
Q  213 acatcatagcttaatctcttttttaggtcattaatcaaatccaatcaactttgcaagannnnnnnncatgttaattgatccatatcataaatctaaaatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  8795525 acatcatagcttaatctcttttttaggtcattaatcaaatccaatcaactttgcaagatttttttccatgttaattgatccatatcataaatctaaaatc 8795624  T
Q  313 cactttgcacttgtccccaggaaagtacttcagctctttggagctactctactatctgcattttgcactccaattaggaaagaaacttgtgagtatatac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8795625 cactttgcacttgtccccaggaaagtacttcagctctttggagctactctactatctgcattttgcactccaattaggaaagaaacttgtgagtatatac 8795724  T
Q  413 ctcgcaattaccacttctgggaacaagtgcagaagaaaccctaattcattggttattatttacaaaacctaaattcacccaccaatcttcctgttccgaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8795725 ctcgcaattaccacttctgggaacaagtgcagaagaaaccctaattcattggttattatttacaaaacctaaattcacccaccaatcttcctgttccgaa 8795824  T
Q  513 gtcctccaaattttggattcattacaaagtagattctttaataatgttaatatattaagaacactacaaaagccagtgaaatctgagagtttctgtgacc 612  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8795825 gtcctccaatttttggattcattacaaagtagattctttaataatgttaatatattaagaacactacaaaagccagtgaaatctgagagtttctgtgacc 8795924  T
Q  613 tcatcaaaagggaaattttaagaaaaagctatatgtgtgatgatg 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8795925 tcatcaaaagggaaattttaagaaaaagctatatgtgtgatgatg 8795969  T

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