View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17435_high_14 (Length: 269)
Name: NF17435_high_14
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 30187643 - 30187495
Alignment:
| Q |
106 |
caacagctaaatttattaaacattttaacttcaatcaaccaacttttaagctataagctatcagttatcaactacaagttaactttataacaattttacc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30187643 |
caacagctaaatttattaaacattttaacttcaatcaaccaacttttgagctataagctatcagttatcaactacaagttagctttataacaattttacc |
30187544 |
T |
|
| Q |
206 |
aaacggagcctaaatcgtgtaaattaaacttaatatgatgctggatatt |
254 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30187543 |
aaacgtagcctgaatcgtgtaaattaaacttaatatgatgctggatatt |
30187495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 40532604 - 40532678
Alignment:
| Q |
106 |
caacagctaaatttattaaaca-ttttaacttcaatcaaccaacttttaagctataagctatcagttatcaacta |
179 |
Q |
| |
|
|||||||||| |||| ||||| |||||| || ||||| | ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
40532604 |
caacagctaattttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcaacta |
40532678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 38732740 - 38732810
Alignment:
| Q |
106 |
caacagctaaatttattaaaca-ttttaacttcaatcaaccaacttttaagctataagctatcagttatca |
175 |
Q |
| |
|
|||||||||| |||| ||||| |||||| || ||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
38732740 |
caacagctaattttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagttatca |
38732810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 30583253 - 30583325
Alignment:
| Q |
106 |
caacagctaaatttattaaaca-ttttaacttcaatcaaccaacttttaagctataagctatcagttatcaac |
177 |
Q |
| |
|
|||||||||| |||| ||||| |||||| || ||||| | ||||||| |||||||||||||||| ||||||| |
|
|
| T |
30583253 |
caacagctaattttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcaac |
30583325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University