View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_high_17 (Length: 247)
Name: NF17435_high_17
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32147604 - 32147837
Alignment:
| Q |
1 |
ccattgaatttgcaccaaatatcctccaaatcacattgttctgcaaataaagctcaatagtaggcacatccgcacccaatcgtgtcccagtcacattagt |
100 |
Q |
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| T |
32147604 |
ccattgaatttgcaccaaatatcctccaaatcacattgttctgcaaataaagctcaatagtaggtacatccgcacccaatcgtgtcccagtcacattagt |
32147703 |
T |
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| Q |
101 |
gtaacaaaactcaaaaggtgcaaccgaatccaccctttttatgtttcttgcagcagatgctttcacgaaagcgtctgtaactgctttgtaaatagaagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32147704 |
gtaacaaaactcaaaaggtgcaaccgaatccaccctttttatgtttcttgcagcagacgctttcacgaaagcgtctgtaactgctttgtaaatagaagct |
32147803 |
T |
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| Q |
201 |
tctaaaactgtgtaaggatcaaccgtacttatct |
234 |
Q |
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| T |
32147804 |
tccaaaactgtgtaaggatcaacggtacttatct |
32147837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32138211 - 32138447
Alignment:
| Q |
1 |
ccattgaatttgcaccaaatatcctccaaatcacattgt---tctgcaaataaagctcaatagtaggcacatccgcacccaatcgtgtcccagtcacatt |
97 |
Q |
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| T |
32138211 |
ccattgaatttgcaccaaatatcctccaaaccacattttcattttgcaaaaagagctcaatagtaggcacagctgcacccaatcgtgtcccagtcaaatt |
32138310 |
T |
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| Q |
98 |
agtgtaacaaaactcaaaaggtgcaaccgaatccaccctttttatgtttcttgcagcagatgctttcacgaaagcgtctgtaactgctttgtaaatagaa |
197 |
Q |
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| T |
32138311 |
agtgtaacaaaattcaaaaggcgcaaccgaacccaccctctttatgtttcttgcagcagacgctttcacgaaagcgtctgtaactgctttgtaaatagaa |
32138410 |
T |
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| Q |
198 |
gcttctaaaactgtgtaaggatcaaccgtacttatct |
234 |
Q |
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| T |
32138411 |
gcttctaaaaccgtgtaaggatcaaccgtactaatct |
32138447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32126407 - 32126646
Alignment:
| Q |
1 |
ccattgaatttgcaccaaatatcctccaaatcacattgttctgcaaataaagctcaatagtaggcacatccgcacccaatcgtgtcccagtcacatt--- |
97 |
Q |
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|||| |||||||||||||| || |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||| | ||||| | || ||| |
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| T |
32126407 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtaaaagaagctcaattgtaggcacagacgcacccaatggcgtccctggcaaattgtc |
32126506 |
T |
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| Q |
98 |
---agtgtaacaaaactcaaaaggtgcaaccgaatccaccctttttatgtttcttgcagcagatgctttcacgaaagcgtctgtaactgctttgtaaata |
194 |
Q |
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| T |
32126507 |
aaaactataacaaaattcaaaaggcggagatgaatcctctgttgttatgtttcttgcaacagatgctttcacaaaagcgtctgtaactgctttgtaaata |
32126606 |
T |
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| Q |
195 |
gaagcttctaaaactgtgtaaggatcaaccgtacttatct |
234 |
Q |
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|||||||||| ||| |||||||||||||||||||| |||| |
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| T |
32126607 |
gaagcttctagaaccgtgtaaggatcaaccgtactaatct |
32126646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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