View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_high_2 (Length: 573)
Name: NF17435_high_2
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 573
Target Start/End: Complemental strand, 39821775 - 39821217
Alignment:
| Q |
14 |
gatgaactaagtaacacatgagcaacactacaagacaaaagaaaaagtttcccagctggtaccttcagaatcaaatgggaaaaggacagttgaattaatt |
113 |
Q |
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| T |
39821775 |
gatgaactaagtaacacatgagcaacactacaagacaaaagaaaaagtttcccagctggtaccttcagaatcaaatgggaaaaggacagttgaattaatt |
39821676 |
T |
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| Q |
114 |
gtagaatgtagacccacaaaaatgaaaccaagaagtattaaccttagagaatttgaatccaattattagaccaaaatctacttctaggcatgtgataatg |
213 |
Q |
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| T |
39821675 |
gtagaatgtagacccacaaaaatgaaaccaagaagtattaaccttagagaatttgaatccaattattagaccaaaatctacttctaggcatgtgataatg |
39821576 |
T |
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| Q |
214 |
acaatacagagggnnnnnnnttaagatttgttcttaaagtttatattatagtgggtcattactcattagatcaatttttgtctttctgcctaatttctat |
313 |
Q |
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| T |
39821575 |
acaatacagagggaaaaaaattaagatttgttcttaaagtttatattatagtgggtcattactcattagatcaatttttgtctttctgcctaatttctat |
39821476 |
T |
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| Q |
314 |
tcattgagtcctcactacatttattctcttcaccttagaaaaagaaaaatcaccctaatgtatccggtgaatttgacaaaattacgatgagactgtgatt |
413 |
Q |
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| T |
39821475 |
tcattgagtcctcactacatttattctcttcaccttagaaaaagaaaaatcaccctaatgtatccggtgagtttgacaaaattacgatgagactgtgatt |
39821376 |
T |
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| Q |
414 |
ttgctgacatatgattctacaaactcaccgtcggtcc--aaacattcataaaaaaccaaaattgaatagtaaaaacacacacaagaaacagaatattacc |
511 |
Q |
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| T |
39821375 |
ttgccgacatatgattctacaaactcaccg-cggtccaaaaacattcatataaaaccaaaaatgaatagtaaaa--acacacaagaaacagaatattacc |
39821279 |
T |
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| Q |
512 |
attcagtagcatgccttatgcttgagcttggacgaaagctcctcttccctgaacaactaggc |
573 |
Q |
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| T |
39821278 |
attcagtagcatgccttatgcttgagcttggacgaaagctcctcttccctgaaacactaggc |
39821217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 548
Target Start/End: Original strand, 44050225 - 44050265
Alignment:
| Q |
508 |
taccattcagtagcatgccttatgcttgagcttggacgaaa |
548 |
Q |
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| T |
44050225 |
taccattcagtggcatgtcttatgcttgaacttggacgaaa |
44050265 |
T |
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