View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17435_high_5 (Length: 394)
Name: NF17435_high_5
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 38984338 - 38983963
Alignment:
| Q |
1 |
tcagattccgcttcctagaggctatcatcagaggctgaatcttcttcattatcatcaatatccctccaaaatttcttcagaatttggacacttttgaggc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38984338 |
tcagattccgcttcctggaggctatcattagaggctgaatcttcttcatcatcatcaatatccctccaaaatttcttcagaatttggacacttttgaggc |
38984239 |
T |
|
| Q |
101 |
tagcttcagagtgtatgttagtggtctgcttccgaataactgtgctaacaggcaacttgtcacttgttaaagaagtgtaataagtagtgataggttatgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38984238 |
tagcttcagagtgtatgttagtggtctgcatccgaataactgtgctaacaggaaacttgtcacttgttaaagaagtgtaataagtagtgataggttatgg |
38984139 |
T |
|
| Q |
201 |
tatggggtgctgcacaactatgttattcttgtctgaaaacacagtattcaaggccatgtttggagctatgatcaagctagtatccaaaaagttagtaaca |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38984138 |
tatggggtgctgcacaagtatgttattcttgtctgaaaacacagtattcaaggccacgtttggagctatgatcaagctagtatccaaaaagttagtaaca |
38984039 |
T |
|
| Q |
301 |
gttgcactcacacttttagctacaccagcaggctccaagatagcatgctgcatatcataggagctgttacttagtc |
376 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38984038 |
gttgcactcacacttttagctacatcagcaggctccaagatagcatgctgcatatcataggagctgttacttagtc |
38983963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 325
Target Start/End: Original strand, 50249723 - 50250018
Alignment:
| Q |
27 |
atcagaggctgaatcttcttcattatcatcaatatccctccaaaatttcttcagaatttggacacttttgaggctagcttcagagtgtatgttagtggtc |
126 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||| | | ||||||||| |||||| ||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
50249723 |
atcagaggctgaatcttctacatcatcatca---tccccctataatttcttcggaatttagacacttttaaggctagcttcaaaatgtatgttagtggtc |
50249819 |
T |
|
| Q |
127 |
tgcttccgaataactgtgctaacaggcaacttgtcacttgttaaagaagtgtaataagtagtgataggttatggtatggggtgctgcacaactatgttat |
226 |
Q |
| |
|
|||||| || |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||| ||| | |||||| || |||||||| |
|
|
| T |
50249820 |
tgcttctcaacaactgtgctaacagagtgcttgtcatttgttaaagaagtgtaagcagtagtgataggttgtggcatgagatgctgcccacttatgttat |
50249919 |
T |
|
| Q |
227 |
tcttgtctgaaaacacagtattcaaggccatgtttggagctatgatcaagctagtatccaaaaagttagtaacagttgcactcacacttttagctacac |
325 |
Q |
| |
|
|||||||||| | | ||| |||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||| |||| |||| |
|
|
| T |
50249920 |
tcttgtctgatatcccaggattcaaggccatctttggagctatgatcaagctagcatccaaagagtgagtaacacatgcactcacacttctagccacac |
50250018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University