View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_high_9 (Length: 305)
Name: NF17435_high_9
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32252972 - 32253160
Alignment:
| Q |
1 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttca |
100 |
Q |
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| T |
32252972 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttca |
32253071 |
T |
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| Q |
101 |
ttaatttgacttatcacatcatagaaatgtacacattggttaaat-attagttttatgcataccctgtagaggagaacatattcggcac |
188 |
Q |
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| T |
32253072 |
ttaatttaacttatcacatcatagaaatgtacacattggttaaataattagttttatgcataccctgtagaggagaacatattcggcac |
32253160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 32244344 - 32244238
Alignment:
| Q |
188 |
cataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactcca |
287 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244344 |
cataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactcca |
32244246 |
T |
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| Q |
288 |
caggttct |
295 |
Q |
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|||||||| |
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| T |
32244245 |
caggttct |
32244238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 32254874 - 32254767
Alignment:
| Q |
188 |
cataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactcca |
287 |
Q |
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| T |
32254874 |
cataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccactcca |
32254775 |
T |
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| Q |
288 |
caggttct |
295 |
Q |
| |
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|||||||| |
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| T |
32254774 |
caggttct |
32254767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 32250053 - 32249947
Alignment:
| Q |
188 |
cataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactcca |
287 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
32250053 |
cataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccactcca |
32249955 |
T |
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| Q |
288 |
caggttct |
295 |
Q |
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|||||||| |
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| T |
32249954 |
caggttct |
32249947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32242392 - 32242455
Alignment:
| Q |
1 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctg |
64 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32242392 |
ctctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32242455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32248222 - 32248285
Alignment:
| Q |
1 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctg |
64 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32248222 |
ctctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32248285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 30605384 - 30605327
Alignment:
| Q |
10 |
cgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcat |
67 |
Q |
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|||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
30605384 |
cgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctgcat |
30605327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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