View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_low_10 (Length: 301)
Name: NF17435_low_10
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 8262407 - 8262132
Alignment:
| Q |
9 |
agcacagacaacgatctccatccatgttgtttgaagctgaaacatagtatttcagatgaaagtggaaacgtgacactctatcataaagctcgttcaaagt |
108 |
Q |
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| T |
8262407 |
agcacagactatgatcttcatccatgttgtttgaagctgaaacatagtatttcagatgaaagtggaaacgtgacactctatcataaagctcgttcaaagt |
8262308 |
T |
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| Q |
109 |
gtgtgaaatgtaagcataagcatgttgtgggaaattttcaagggtggtcttattatgatggaaattctacttatcatgtgtcttgtttcaaggctttgat |
208 |
Q |
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| T |
8262307 |
gtgtgaaatgtaagcataagcatgttgtgggaaattttcaagggtggtcttattatgatggaaattctagttatcatgtgtcttgtttcaaggctttgat |
8262208 |
T |
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| Q |
209 |
acttgagaactggannnnnnnttatttttctcaaggagataggtcaattacaaattcaacttctatgagtgatagg |
284 |
Q |
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| T |
8262207 |
acttgagaactggagggggggttatttttctcaaggagataggtcaattacaaattcaacttctatgagtgatagg |
8262132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 8322572 - 8322765
Alignment:
| Q |
21 |
gatctccatccatgttgtttgaagctgaaacatagtatttcagatgaaagtg-gaaacgtgacactctatcataaagctcgttcaaagtgtgtgaaatgt |
119 |
Q |
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||||| ||||| ||||||||||||||| || |||||||||| |||| | | ||||| || |||||||| |||| |||||||||||||||| |||||| |
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| T |
8322572 |
gatcttcatccttgttgtttgaagctgcaagatagtatttctgatggagacgtgaaac-tgcaactctatcgtaaatctcgttcaaagtgtgtaaaatgt |
8322670 |
T |
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| Q |
120 |
aagcataagcatgttgtgggaaattttcaagggtggtcttattatgatggaaattctacttatcatgtgtcttgtttcaaggctttgatacttga |
214 |
Q |
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| T |
8322671 |
aagcataagcatgttgtgggaaatattcaagggtggtcttattatgatggaaattctagttatcatgtgtcttgtttcaaggctttgatacttga |
8322765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 8279976 - 8280223
Alignment:
| Q |
9 |
agcacagacaacgatctccatccatgttgtttgaagctgaaacatagtatttcagatgaaagtggaaacgtgac----actctatcataaagc--tcgtt |
102 |
Q |
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||||||||| | ||||| |||||||||||||||||| || |||||||||| || ||||| | ||||||||||| | | | ||| | || || || |
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| T |
8279976 |
agcacagactatgatcttcatccatgttgtttgaagttgcaacatagtatatctgatgataacggaaacgtgacgttgaatttgtcaaagagagttcatt |
8280075 |
T |
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| Q |
103 |
caaagtgtgtgaaatgtaagcataagcatgttgtgggaaattttcaagggtggtcttattatgatggaaattctacttatcatgtgtcttgtttcaaggc |
202 |
Q |
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| T |
8280076 |
caaagtgtggtaaatgtaagcataagcatgttatgggaaaagttcaaggatggtcttattatgatggaaattcttgctatcatgtgtcttgtttcaagga |
8280175 |
T |
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| Q |
203 |
tttgatacttgagaactggannnnnnnttatttttctcaaggagatag |
250 |
Q |
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|||||| ||| |||| |||| |||||||||| |||||||||| |
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| T |
8280176 |
tttgattcttcagaattggaggatgggttatttttctgaaggagatag |
8280223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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