View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_low_11 (Length: 281)
Name: NF17435_low_11
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 36940145 - 36940396
Alignment:
| Q |
17 |
agtataaagggttaggtttggttgagtcaattgggtgtccctcatccgacatgcacatttgactaatctagtattttagacagaactggatagaatcgat |
116 |
Q |
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| T |
36940145 |
agtataaagggttaggtttggttgagtcaattgggtgtccctcatccgacatgcacatttgactaatctagtattttagacagaactggatagaatcgat |
36940244 |
T |
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| Q |
117 |
gggtacaattcgataaacaattaattagttacaccaaaccctaagcataagacaatgtacaatttaaaactcttccnnnnnnncatattattcatataat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
36940245 |
gggtacaattcgataaacaattaattagttacaccaaa-cctaagcataagacaatgtacaatttaaaactcttccaaaaaaacatattattcacataat |
36940343 |
T |
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| Q |
217 |
attttcaaaattacaaaacacattacatgttatctttctttcttacacacaca |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36940344 |
attttcaaaattacaaaacacattacatgttatctttctttcttacacacaca |
36940396 |
T |
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