View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17435_low_12 (Length: 275)

Name: NF17435_low_12
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17435_low_12
NF17435_low_12
[»] chr1 (7 HSPs)
chr1 (17-267)||(1093713-1093965)
chr1 (35-165)||(1076140-1076270)
chr1 (85-165)||(2736175-2736255)
chr1 (85-165)||(39959843-39959923)
chr1 (101-157)||(5298768-5298824)
chr1 (101-157)||(25948217-25948273)
chr1 (101-157)||(47490286-47490342)
[»] chr4 (5 HSPs)
chr4 (84-165)||(33075796-33075877)
chr4 (83-162)||(42678835-42678914)
chr4 (101-157)||(43930118-43930174)
chr4 (132-165)||(20144869-20144902)
chr4 (89-156)||(55899070-55899137)
[»] chr7 (8 HSPs)
chr7 (85-165)||(24142889-24142969)
chr7 (85-165)||(28556080-28556160)
chr7 (85-165)||(47958503-47958583)
chr7 (85-165)||(48253856-48253936)
chr7 (85-165)||(28545497-28545577)
chr7 (85-165)||(28549912-28549992)
chr7 (101-157)||(42617411-42617467)
chr7 (89-156)||(2415880-2415947)
[»] chr2 (1 HSPs)
chr2 (85-165)||(36011887-36011967)
[»] chr3 (3 HSPs)
chr3 (85-165)||(21127734-21127814)
chr3 (85-165)||(43291863-43291943)
chr3 (101-157)||(42085063-42085119)
[»] scaffold0648 (1 HSPs)
scaffold0648 (101-157)||(7753-7809)
[»] chr8 (1 HSPs)
chr8 (101-157)||(33802591-33802647)
[»] chr5 (2 HSPs)
chr5 (101-157)||(12974268-12974324)
chr5 (101-157)||(40579698-40579754)
[»] chr6 (1 HSPs)
chr6 (89-156)||(30809870-30809937)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 1093713 - 1093965
Alignment:
Q  17 aataatttgtatcagattgagagttacacaatgtttatattaagatgttacgaaattcaaatgaaattgttgagatggccaagttggtctaaggcgctag 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |    
T  1093713 aatagtttgtatcagattgagagttacacaatgtttatattaagatgttacgaaattcaaataaaattgttgagatggccgagttggtctaaggcgcccg 1093812  T
Q  117 attaaggttctggttcgaaagggtgtgggttcaaatcccactctcaacannnnnnnattcttctagaaaaacatttctttttgtttctcgttatttaagt 216  Q
    ||||||||||||||   || ||||||||||||||||||| |||||||||       ||||||||| ||||||||||||||||||||||||||||||||||    
T  1093813 attaaggttctggtctaaatgggtgtgggttcaaatcccgctctcaacatttttttattcttctaaaaaaacatttctttttgtttctcgttatttaagt 1093912  T
Q  217 caaggttc-tttccttc-nnnnnnngtcaaggttctattctcttcttcttctc 267  Q
    |||||||| ||||||||        ||||||||||||||||||||||| ||||    
T  1093913 caaggttcttttccttcaaaaaaaagtcaaggttctattctcttcttcgtctc 1093965  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 1076140 - 1076270
Alignment:
Q  35 gagagttacacaatgtttatattaagatgttacgaaattcaaatgaaattgttgagatggccaagttggtctaaggcgctagattaaggttctggttcga 134  Q
    ||||||||| |||||||||||||||||||||||||||||   |  |||| |||||||||||| |||||||||||||||  |||||||||||||||| |||    
T  1076140 gagagttacgcaatgtttatattaagatgttacgaaattggtacaaaatagttgagatggccgagttggtctaaggcgtcagattaaggttctggtccga 1076239  T
Q  135 aagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||| |||||||||||||||||||||||||    
T  1076240 aagggcgtgggttcaaatcccactctcaaca 1076270  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 2736175 - 2736255
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  2736175 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 2736255  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 39959843 - 39959923
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  39959843 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 39959923  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 5298768 - 5298824
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  5298768 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 5298824  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 25948217 - 25948273
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  25948217 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 25948273  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 47490342 - 47490286
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  47490342 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 47490286  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 33075796 - 33075877
Alignment:
Q  84 tgttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  33075796 tgttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 33075877  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 42678914 - 42678835
Alignment:
Q  83 ttgttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctca 162  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||| || |||||||| |||  |||||||| ||||||||    
T  42678914 ttgttgagatggccgagttagtctaaggcgccagattaaggttctcgtccgaaagggcgtgaattcaaatcacactctca 42678835  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 43930174 - 43930118
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  43930174 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 43930118  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 20144902 - 20144869
Alignment:
Q  132 cgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||||||||||||||||||||||||||||||||    
T  20144902 cgaaagggtgtgggttcaaatcccactctcaaca 20144869  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 55899137 - 55899070
Alignment:
Q  89 agatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatccca 156  Q
    |||||||| |||||||||||||||| || || |||| ||||| ||||||||  ||||||| |||||||    
T  55899137 agatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 55899070  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 24142969 - 24142889
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  24142969 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgatagggtgtgggttcaaatcccactctcaaca 24142889  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 28556080 - 28556160
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  28556080 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 28556160  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 47958583 - 47958503
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  47958583 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 47958503  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 48253856 - 48253936
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  48253856 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 48253936  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 28545497 - 28545577
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  28545497 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 28545577  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 28549912 - 28549992
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  28549912 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 28549992  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 42617467 - 42617411
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  42617467 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42617411  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 2415880 - 2415947
Alignment:
Q  89 agatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatccca 156  Q
    |||||||| |||||||||||||||| || || |||| ||||| ||||||||  ||||||| |||||||    
T  2415880 agatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 2415947  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 36011887 - 36011967
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  36011887 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 36011967  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 21127814 - 21127734
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  21127814 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 21127734  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 43291943 - 43291863
Alignment:
Q  85 gttgagatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccactctcaaca 165  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  43291943 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 43291863  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 42085119 - 42085063
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  42085119 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42085063  T

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Target: scaffold0648 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 7809 - 7753
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  7809 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 7753  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 33802647 - 33802591
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  33802647 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 33802591  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 12974268 - 12974324
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  12974268 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 12974324  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 40579698 - 40579754
Alignment:
Q  101 tggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatcccac 157  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||    
T  40579698 tggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 40579754  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 30809937 - 30809870
Alignment:
Q  89 agatggccaagttggtctaaggcgctagattaaggttctggttcgaaagggtgtgggttcaaatccca 156  Q
    |||||||| |||||||||||||||| || || |||| ||||| ||||||||  ||||||| |||||||    
T  30809937 agatggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 30809870  T

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