View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_low_15 (Length: 259)
Name: NF17435_low_15
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 13486987 - 13487217
Alignment:
| Q |
15 |
aatatggcagtcaatctcaaggtgtttggt---ttgttcatgaaagactagattaacagcgatgtagatagcactttgattgtcacagtaatgaacatgt |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486987 |
aatatggcagtcaatctcaaggtgtttggtaatttgttcatgaaagactagattaacagcgatgtagatagcactttgattgtcacagtaatgaacatgt |
13487086 |
T |
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| Q |
112 |
gctttggtacattgaatctctgataaggtaaagcaaccattgcaattaacaagtagtagatgcaagtgctcgttattcagcttctaatgtgatctagaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13487087 |
gctttggtacattgaatctctgataaggtaaagcaaccattgcaattaacaactagtagatgcaagtgctcgttattcagcttctaatgtgatctagaga |
13487186 |
T |
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| Q |
212 |
ctgtaagttgtttctttgttctccaagaaac |
242 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13487187 |
ctgtaagttgtttctttgttctccaagaaac |
13487217 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 18482571 - 18482682
Alignment:
| Q |
16 |
atatggcagtcaatctcaaggtgtttggtttgttcatgaaagactagattaacagcgatgtagatagcactttgattgtcacagtaatgaacatgtgctt |
115 |
Q |
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|||||||||||||||| ||| |||||||| ||||| ||||| ||||| |||| ||||||||||||||||| || ||||| || ||||||||| | |
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| T |
18482571 |
atatggcagtcaatctaaagatgtttggtgcattcattgaagacatgattagcagcaatgtagatagcactttggttatcacaatagagaacatgtggct |
18482670 |
T |
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| Q |
116 |
tggtacattgaa |
127 |
Q |
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|| ||||||||| |
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| T |
18482671 |
tgatacattgaa |
18482682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 15760682 - 15760581
Alignment:
| Q |
16 |
atatggcagtcaatctcaaggtgtttggtttgttcatgaaagactagattaacagcgatgtagatagcactttgattgtcacagtaatgaacatgtgctt |
115 |
Q |
| |
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||||| |||||||||||||| |||||||| |||||| ||||| ||||| |||| |||||||||||||| || || ||||| ||| ||||| ||| || |
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| T |
15760682 |
atatgacagtcaatctcaagatgtttggtgcattcatggaagacaggattagcagcaatgtagatagcactctggttatcacaataaagaacaggtggtt |
15760583 |
T |
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| Q |
116 |
tg |
117 |
Q |
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|| |
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| T |
15760582 |
tg |
15760581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 17131952 - 17131869
Alignment:
| Q |
15 |
aatatggcagtcaatctcaaggtgtttggtttgttcatgaaagactagattaacagcgatgtagatagcactttgattgtcaca |
98 |
Q |
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|||||| |||||||| ||||||||||||||| |||||| || |||||||| | || |||| |||||||||||||| ||||| |
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| T |
17131952 |
aatatgacagtcaatttcaaggtgtttggttctttcatggaacactagatttgctgcaatgtgcatagcactttgattatcaca |
17131869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 2361722 - 2361685
Alignment:
| Q |
202 |
gatctagagactgtaagttgtttctttgttctccaaga |
239 |
Q |
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| T |
2361722 |
gatctagagactgtgatttgtttctttgttctccaaga |
2361685 |
T |
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