View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_low_18 (Length: 238)
Name: NF17435_low_18
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_18 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 10820415 - 10820589
Alignment:
| Q |
16 |
caaaatcagcaagcaaatttaacaagtattatgcagaatttctaacacttcgtaatcccctcctaaacatacatcataacttatgtttctcttcggtgaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820415 |
caaaatcagcaagcaaatttaacaagtattatgcataatttctaacactctataatcccctcctaaacatacatcataacttatgtttctcttcggtgaa |
10820514 |
T |
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| Q |
116 |
aatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgcacaacactcacgaaata |
190 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820515 |
aatatccacacaatctttagcagctgaaatcctagaaggaatggggaatctaggctgcacaacactcacgaaata |
10820589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 44721193 - 44721356
Alignment:
| Q |
75 |
ctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgca |
174 |
Q |
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||||||||||||| || ||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44721193 |
ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctatagcaactgaaatcctagaaggaatggggaatctaggctgca |
44721292 |
T |
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| Q |
175 |
caacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaat |
238 |
Q |
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|||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
44721293 |
caacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaat |
44721356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 10820737 - 10820785
Alignment:
| Q |
193 |
gaaattccttcccctcaataaactt---taaaggcaactcatcaacaat |
238 |
Q |
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| T |
10820737 |
gaaattccttcccctcgataaacttatttaaaggcaactcatcaacaat |
10820785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 43305794 - 43305631
Alignment:
| Q |
75 |
ctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgca |
174 |
Q |
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||||||||||||| || ||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43305794 |
ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctatagcaactgaaatcctagaaggaatggggaatctaggctgca |
43305695 |
T |
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| Q |
175 |
caacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaat |
238 |
Q |
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|||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
43305694 |
caacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaat |
43305631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 25345827 - 25345646
Alignment:
| Q |
57 |
ctaacacttcgtaatcccctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaa |
156 |
Q |
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||||||||| |||||||||||||||| |||| | ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
25345827 |
ctaacactttgtaatcccctcctaaaaatactttttaacttatgtttctcatcagtgaaaatatcccaacaatctctagcagctgaaatcctataaggaa |
25345728 |
T |
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| Q |
157 |
tggggaatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaat |
238 |
Q |
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| | ||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||| ||||| |||||||||||||| |
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| T |
25345727 |
ttgagaatctaggctgcacaacactcatgaaatagcgaagcccctccccctcaacaaacttaaaaggtaactcatcaacaat |
25345646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 78 - 238
Target Start/End: Complemental strand, 9163221 - 9163061
Alignment:
| Q |
78 |
ctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgcacaa |
177 |
Q |
| |
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|||||||||| || ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
9163221 |
ctaaacatacttcttaacttatgtttctcttcggttaaaatatctcagcaatctctagcaactgaaatcctagaaggaatggggaatctaggctgcccaa |
9163122 |
T |
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| Q |
178 |
cactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaat |
238 |
Q |
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|||||| ||||||| |||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
9163121 |
cactcataaaatagcaaaattcctccccctcaagaaacttaaaaggcaactcatcaacaat |
9163061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 9753499 - 9753331
Alignment:
| Q |
70 |
atcccctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctagg |
169 |
Q |
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|||||||||||||||||| || || ||||||||||| ||||| ||||||||| ||||||| ||||||||| ||||||||||||||| |||||||| || |
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| T |
9753499 |
atcccctcctaaacatacttcttagtttatgtttctcatcggtcaaaatatcccaacaatctttagcagctgcaatcctagaaggaattgggaatctcgg |
9753400 |
T |
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| Q |
170 |
ctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaat |
238 |
Q |
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|||||||||||||| |||||||||||||| || |||||| | |||||| ||||| |||||||||||||| |
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| T |
9753399 |
ctgcacaacactcatgaaatagcgaaatttctccccctcgacaaacttaaaaggtaactcatcaacaat |
9753331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 12854257 - 12854361
Alignment:
| Q |
125 |
acaatctctagcagctgaaatcctagaaggaatggggaatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggc |
224 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||| ||| |||||||| |||||| ||||| |
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| T |
12854257 |
acaatctctagcagctgaaatcctagaaggaattgaaaatctaggttgcacaacactcatgaaatagcgaaacccctccccctcaacaaacttaaaaggt |
12854356 |
T |
|
| Q |
225 |
aactc |
229 |
Q |
| |
|
||||| |
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| T |
12854357 |
aactc |
12854361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 18348107 - 18347962
Alignment:
| Q |
69 |
aatcccctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctag |
168 |
Q |
| |
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||||||||||||| ||||| | ||||||||||||||| | |||||||||||| ||||||| || || |||||||||| ||||||| |||||||||| |
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| T |
18348107 |
aatcccctcctaatcatactttttaacttatgtttctcattagtgaaaatatcccaacaatctgtataagatgaaatcctaaaaggaattgggaatctag |
18348008 |
T |
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| Q |
169 |
gctgcacaacactcacgaaatagcgaaattccttcccctcaataaact |
216 |
Q |
| |
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||||||||||| || ||||||||||||| ||| |||||||| ||||| |
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| T |
18348007 |
gctgcacaaca--catgaaatagcgaaatccctccccctcaacaaact |
18347962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 11906177 - 11906247
Alignment:
| Q |
162 |
aatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatc |
232 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||| ||| ||||||| |||||| |||||||||||||| |
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|
| T |
11906177 |
aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcatc |
11906247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 30520153 - 30520083
Alignment:
| Q |
162 |
aatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatc |
232 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||| ||| ||||||| |||||| |||||||||||||| |
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| T |
30520153 |
aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcatc |
30520083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 13673421 - 13673490
Alignment:
| Q |
162 |
aatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcat |
231 |
Q |
| |
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|||||||| ||||||||||||| |||||| |||||| ||| ||||||| |||||| ||||||||||||| |
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| T |
13673421 |
aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcat |
13673490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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