View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17435_low_19 (Length: 237)

Name: NF17435_low_19
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17435_low_19
NF17435_low_19
[»] chr1 (2 HSPs)
chr1 (9-234)||(21809978-21810203)
chr1 (17-106)||(41346876-41346965)
[»] scaffold0265 (1 HSPs)
scaffold0265 (9-234)||(22606-22831)
[»] chr4 (1 HSPs)
chr4 (9-234)||(1927692-1927917)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-234)||(58746-58965)
[»] chr5 (1 HSPs)
chr5 (15-234)||(21880889-21881108)
[»] scaffold0029 (1 HSPs)
scaffold0029 (9-234)||(127699-127924)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-234)||(305516-305741)
[»] scaffold0093 (1 HSPs)
scaffold0093 (9-226)||(12849-13066)
[»] chr2 (4 HSPs)
chr2 (45-169)||(20383533-20383657)
chr2 (14-178)||(33237090-33237254)
chr2 (12-217)||(32297353-32297558)
chr2 (27-219)||(25974055-25974247)
[»] scaffold0125 (2 HSPs)
scaffold0125 (18-107)||(38098-38187)
scaffold0125 (18-99)||(26563-26644)
[»] chr3 (1 HSPs)
chr3 (18-107)||(14677239-14677328)
[»] chr7 (1 HSPs)
chr7 (27-142)||(20939856-20939971)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 21810203 - 21809978
Alignment:
9 accagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21810203 accagagaaggaatggtttcatccaccaaagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 21810104  T
109 tagtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 208  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
21810103 cagtgggatcagttatgacattatcaccatcctgtaaaagagagatagattttgtcgttgctcggattttggagaccttatggaaataggcagtgttgcg 21810004  T
209 gtcaccactaagaaactgatgatgtc 234  Q
    ||||||||||||||||||||| ||||    
21810003 gtcaccactaagaaactgatggtgtc 21809978  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 41346876 - 41346965
Alignment:
17 aggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctat 106  Q
    |||||| |||||||| |||||  |||| |  ||||| || ||||||| |||||| ||  | |||||||||||||||||||||| ||||||    
41346876 aggaattgtttcatcaaccaacatattctatgcacagttattatccacgctaaaaatagcttgaaaataagaaagaatatgcatctctat 41346965  T

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Target: scaffold0265 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 22606 - 22831
Alignment:
9 accagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22606 accagagaaggaatggtttcatccaccaaagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 22705  T
109 tagtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 208  Q
     |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
22706 cagtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgatgctcggattttggagaccttatggaaataggcagtgttgcg 22805  T
209 gtcaccactaagaaactgatgatgtc 234  Q
    ||||||||||||||||||||| ||||    
22806 gtcaccactaagaaactgatggtgtc 22831  T

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Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 1927692 - 1927917
Alignment:
9 accagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1927692 accagagaaggaatggtttcatccaccaaagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 1927791  T
109 tagtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 208  Q
     |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1927792 cagtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 1927891  T
209 gtcaccactaagaaactgatgatgtc 234  Q
     |||||||||||||||||||| ||||    
1927892 atcaccactaagaaactgatggtgtc 1927917  T

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Target: scaffold0012 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 58746 - 58965
Alignment:
15 gaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgg 114  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
58746 gaaggaatggtttcatccaccatagtattctgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagcagtgg 58845  T
115 gatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcacc 214  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
58846 gatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcacc 58945  T
215 actaagaaactgatgatgtc 234  Q
    ||||||||||||||| ||||    
58946 actaagaaactgatggtgtc 58965  T

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Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 21880889 - 21881108
Alignment:
15 gaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgg 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
21880889 gaaggaatggtttcatccaccatagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagcagtgg 21880988  T
115 gatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcacc 214  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||    
21880989 gatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgctgctcgaattttggagaccttatggaaataggcagtgttgagatcacc 21881088  T
215 actaagaaactgatgatgtc 234  Q
    ||||||||||||||| ||||    
21881089 actaagaaactgatggtgtc 21881108  T

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Target: scaffold0029 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 127924 - 127699
Alignment:
9 accagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 108  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
127924 accagagaaggaatggtttcatccaccaaagtattctgagtacaattgttatccatgctaaaaatttcctgaaaataagaaagaatatgcaactctatag 127825  T
109 tagtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 208  Q
     |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| ||||||||||||||||||||||    
127824 cagtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgatgctccaattttggagaccctatggaaataggcagtgttgcg 127725  T
209 gtcaccactaagaaactgatgatgtc 234  Q
    |||||   | ||||||||||| ||||    
127724 gtcacacttgagaaactgatggtgtc 127699  T

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Target: scaffold0002 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 305741 - 305516
Alignment:
9 accagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 108  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
305741 accagagaaggaatggtttcatccaccaaagtattctgagtacaattgttatccatgctaaaaatttcctgaaaataagaaagaatatgcaactctatag 305642  T
109 tagtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 208  Q
     |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| ||||||||||||||||||||||    
305641 cagtgggatcagttatgacattatcaccatcctgtaaaagagaaatagattttgtcgatgctccaattttggagaccctatggaaataggcagtgttgcg 305542  T
209 gtcaccactaagaaactgatgatgtc 234  Q
    |||||   | ||||||||||| ||||    
305541 gtcacacttgagaaactgatggtgtc 305516  T

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Target: scaffold0093 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 13066 - 12849
Alignment:
9 accagagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatag 108  Q
    ||||||||||||||| |||||||||||| |||||| |||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
13066 accagagaaggaatgttttcatccaccatagtattttgagcacagttgttgtccatgttaaaaatttcctgaaaataagaaagaatatgcaactctatag 12967  T
109 tagtgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcg 208  Q
     |||||||||||| |  ||||||||||||||| |||||||||| ||||| |||||||||||||||||||  |||||| |||| |||||||||||||||||    
12966 cagtgggatcagtgataacattatcaccatccagtaaaagagaaatagactttgtcgctgctcggatttgagagaccctatgaaaataggcagtgttgcg 12867  T
209 gtcaccactaagaaactg 226  Q
    ||||||||||||||||||    
12866 gtcaccactaagaaactg 12849  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 20383657 - 20383533
Alignment:
45 tgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgggatcagttaagacattatcaccatcctgta 144  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| | |||||||||||| |  |||||||| ||||||||||    
20383657 tgagcacagttgttgtccatgctaaaaattgcctgaaaataagaaagaatatgcaattctattgcagtgggatcagtaataacattatccccatcctgta 20383558  T
145 aaagagagatagattttgtcgctgc 169  Q
    ||| ||| |||| ||||||| ||||    
20383557 aaaaagaaatagtttttgtcactgc 20383533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 33237090 - 33237254
Alignment:
14 agaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtg 113  Q
    ||||||||| |||||||| |||| |||||| ||| |||||||||||||||||||||||| | ||||||||||||| ||||||| |  |||||||   |||    
33237090 agaaggaattgtttcatctaccagagtattctgaacacaattgttatccatgctaaagagtgcctgaaaataagagagaatattcgtctctatatctgtg 33237189  T
114 ggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggatttt 178  Q
    |||||||  |  ||||| ||||||||||| || | ||| || ||||| || ||||| ||||||||    
33237190 ggatcagagataacattgtcaccatcctgcaagaaagaaatcgatttggttgctgcccggatttt 33237254  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 32297558 - 32297353
Alignment:
12 agagaaggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtag 111  Q
    ||||| ||||| |||||||| ||||||||||| || | |||||| || |||||||| || ||| ||||||||||||| ||||||||||| | |||||| |    
32297558 agagagggaattgtttcatcaaccaaagtattttgtgtacaattattttccatgctgaatattgcctgaaaataagagagaatatgcaattatatagttg 32297459  T
112 tgggatcagttaagacattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtc 211  Q
    || | | ||| |  | ||| || ||||||| | ||| ||| ||||||||||| ||||| |||||||| || |   |||| ||||| |||||||| |||||    
32297458 tgtgtttagtaataatattgtctccatcctcttaaaaagaaatagattttgttgctgcccggattttagaaattctatgaaaataagcagtgttacggtc 32297359  T
212 accact 217  Q
     |||||    
32297358 tccact 32297353  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 25974055 - 25974247
Alignment:
27 tcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgggatcagttaaga 126  Q
    ||||||||||| ||||| ||| |||| || ||||||||| |||| ||  | |||||||||||||||||||||| ||| |||    |||||||||| |  |    
25974055 tcatccaccaacgtattttgaacacagttattatccatggtaaaaataccttgaaaataagaaagaatatgcatctcaatatccatgggatcagtaagaa 25974154  T
127 cattatcaccatcctgtaaaagagagatagattttgtcgctgctcggattttggagaccttatggaaataggcagtgttgcggtcaccactaa 219  Q
    |||| ||||||||||| |  | ||| ||||| || || ||||| |||||||| || ||| | || || || |||||||| ||||| |||||||    
25974155 cattttcaccatcctgcagtaaagaaatagagttggtggctgcccggattttagacaccctgtgaaagtaagcagtgttacggtccccactaa 25974247  T

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Target: scaffold0125 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 38098 - 38187
Alignment:
18 ggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctata 107  Q
    |||||||| |||||||| |||||||| ||| |||| || ||||||||||| || ||  ||||||| ||||| ||||||||||||||||||    
38098 ggaatggtctcatccactaaagtattttgaccacagttattatccatgctgaaaataccctgaaagtaagatagaatatgcaactctata 38187  T

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Target: scaffold0125; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 26563 - 26644
Alignment:
18 ggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgca 99  Q
    |||||||| |||||||| || ||||| ||| ||||||| ||||||||||| || ||  ||||||| ||||| ||||||||||    
26563 ggaatggtctcatccactaatgtattctgaccacaattattatccatgctgaaaataccctgaaagtaagatagaatatgca 26644  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 14677239 - 14677328
Alignment:
18 ggaatggtttcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctata 107  Q
    |||||| | |||||||| |||||||| ||| |||| || ||||||||||| || ||  ||||||| ||||| ||||||||||||||||||    
14677239 ggaatgatctcatccactaaagtattctgaccacagttattatccatgctgaaaataccctgaaagtaagatagaatatgcaactctata 14677328  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 20939856 - 20939971
Alignment:
27 tcatccaccaaagtattatgagcacaattgttatccatgctaaagatttcctgaaaataagaaagaatatgcaactctatagtagtgggatcagttaaga 126  Q
    ||||||||||| ||||| ||| |||| || ||||||||| |||| ||  | |||||||||||||||||||||| ||| |||    |||||||||| |  |    
20939856 tcatccaccaatgtattttgaacacagttattatccatggtaaaaataccttgaaaataagaaagaatatgcatctcaatatccatgggatcagtaagaa 20939955  T
127 cattatcaccatcctg 142  Q
    |||| |||||||||||    
20939956 cattgtcaccatcctg 20939971  T

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