View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_low_23 (Length: 227)
Name: NF17435_low_23
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_23 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 32147281 - 32147504
Alignment:
| Q |
4 |
tcaaaccacacatgaatttcaatgcaatttattatgaacaaaggaaacactaattattcaaacttgaaagatgattcaaacttgatagagtatnnnnnnn |
103 |
Q |
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| T |
32147281 |
tcaaaccatacatgaatttcaatgcaatttattatgaacaaaggaaacactaattattcaaacttgaaatatgattcaaacttgatagagtataaaaaaa |
32147380 |
T |
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| Q |
104 |
ntgctgatttgggaaaaaggcatctaggcagtggaggtaaagttgaagttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttgg |
203 |
Q |
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| T |
32147381 |
atgttgatttgggaaaacggcatctaggcagtggaggtaaagttgaagttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttag |
32147480 |
T |
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| Q |
204 |
aagcagccaaatcaaattgcaaaa |
227 |
Q |
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| T |
32147481 |
aagcagccaaatcaaattgcaaaa |
32147504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 32138000 - 32138111
Alignment:
| Q |
116 |
gaaaaaggcatctaggcagtggaggtaaagttgaagttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttggaagcagccaaat |
215 |
Q |
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| T |
32138000 |
gaaaaaagcatctaggcagtggaggtaaagttgaagttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttagaagcagccaaat |
32138099 |
T |
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| Q |
216 |
caaattgcaaaa |
227 |
Q |
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| T |
32138100 |
caaattgcaaaa |
32138111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 32137907 - 32137975
Alignment:
| Q |
5 |
caaaccacacatgaatttcaatgcaatttattatgaacaaaggaaacactaattattcaaacttgaaag |
73 |
Q |
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| T |
32137907 |
caaaccatacatgaacttcaatgcaatttattatgaacaaaggagacactaattattcaaacttgaaag |
32137975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 32126198 - 32126307
Alignment:
| Q |
118 |
aaaaggcatctaggcagtggaggtaaagttgaagttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttggaagcagccaaatca |
217 |
Q |
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|||||||||||||||||||||||| |||||||| | ||||| |||||| || |||||| | | |||||| |||||| | || |||||||||||| |
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| T |
32126198 |
aaaaggcatctaggcagtggaggtgaagttgaatcgaaaacaatcagtttgatgtgcaaagatcgtgttgctaaaacccaatctagacgcagccaaatca |
32126297 |
T |
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| Q |
218 |
aattgcaaaa |
227 |
Q |
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|||||||||| |
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| T |
32126298 |
aattgcaaaa |
32126307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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