View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17435_low_27 (Length: 203)

Name: NF17435_low_27
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17435_low_27
NF17435_low_27
[»] chr5 (7 HSPs)
chr5 (24-161)||(41871909-41872044)
chr5 (153-188)||(16822774-16822809)
chr5 (158-189)||(38162589-38162620)
chr5 (155-188)||(3223429-3223462)
chr5 (160-188)||(22052437-22052465)
chr5 (161-189)||(38973327-38973355)
chr5 (156-188)||(40687956-40687988)
[»] chr1 (7 HSPs)
chr1 (78-150)||(12381150-12381220)
chr1 (78-150)||(12385217-12385287)
chr1 (81-153)||(40289042-40289113)
chr1 (82-152)||(12363906-12363976)
chr1 (155-188)||(7764468-7764501)
chr1 (159-188)||(35580956-35580985)
chr1 (156-188)||(8774292-8774324)
[»] chr3 (14 HSPs)
chr3 (82-151)||(51877214-51877283)
chr3 (156-188)||(40410162-40410194)
chr3 (157-188)||(46934275-46934306)
chr3 (157-188)||(50725034-50725065)
chr3 (157-188)||(50787785-50787816)
chr3 (157-188)||(54476038-54476069)
chr3 (157-188)||(54716471-54716502)
chr3 (104-161)||(383454-383511)
chr3 (160-189)||(17258217-17258246)
chr3 (147-188)||(19391990-19392031)
chr3 (155-188)||(27766804-27766837)
chr3 (156-188)||(12881229-12881261)
chr3 (161-189)||(40989685-40989713)
chr3 (160-188)||(46934037-46934065)
[»] chr2 (15 HSPs)
chr2 (156-189)||(21633354-21633387)
chr2 (153-188)||(3263026-3263061)
chr2 (157-188)||(10741365-10741396)
chr2 (78-149)||(14120909-14120980)
chr2 (104-159)||(34353359-34353414)
chr2 (158-188)||(3368668-3368698)
chr2 (158-188)||(31025871-31025901)
chr2 (155-189)||(44078576-44078610)
chr2 (160-189)||(52326-52355)
chr2 (155-184)||(11188519-11188548)
chr2 (159-188)||(41454509-41454538)
chr2 (156-188)||(9715136-9715168)
chr2 (78-154)||(29260215-29260290)
chr2 (160-188)||(34600545-34600573)
chr2 (156-188)||(44245256-44245288)
[»] chr8 (4 HSPs)
chr8 (156-188)||(26920003-26920035)
chr8 (158-187)||(44807098-44807127)
chr8 (160-188)||(31947852-31947880)
chr8 (160-188)||(32498376-32498404)
[»] scaffold1171 (1 HSPs)
scaffold1171 (153-188)||(810-845)
[»] chr6 (6 HSPs)
chr6 (78-133)||(31490777-31490832)
chr6 (78-143)||(12226418-12226483)
chr6 (155-188)||(26716658-26716691)
chr6 (155-188)||(31951488-31951521)
chr6 (161-189)||(2173906-2173934)
chr6 (78-154)||(26539058-26539134)
[»] chr4 (7 HSPs)
chr4 (157-188)||(12893250-12893281)
chr4 (153-188)||(26858335-26858370)
chr4 (155-188)||(232978-233011)
chr4 (156-189)||(13388155-13388188)
chr4 (156-188)||(3770173-3770205)
chr4 (160-188)||(19725657-19725685)
chr4 (157-189)||(55318067-55318099)
[»] scaffold0016 (1 HSPs)
scaffold0016 (159-189)||(199663-199693)
[»] chr7 (4 HSPs)
chr7 (155-188)||(25982982-25983015)
chr7 (154-186)||(16537366-16537398)
chr7 (154-186)||(16628264-16628296)
chr7 (157-189)||(18363290-18363322)
[»] scaffold0286 (1 HSPs)
scaffold0286 (161-189)||(20107-20135)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 41871909 - 41872044
Alignment:
Q  24 tattgaaaaatggtgaaaattaaagtgatagatttgacttttga---gttnnnnnnnttgttgaattcaatttaaacttaccatttttggtttccttgac 120  Q
    |||| ||||||||||||||||||||||||| |||||||||||||   |||       |||||     |||| |||||||| |||||||| ||| ||| ||    
T  41871909 tattaaaaaatggtgaaaattaaagtgatacatttgacttttgaaaagttaaaaaaattgtt-----caatgtaaacttatcatttttgattttcttaac 41872003  T
Q  121 tagtgtcctaaaggcaccggttatcataaccctatatttta 161  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  41872004 tagtgtcctaaagacaccggttaacataaccctatatttta 41872044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 16822774 - 16822809
Alignment:
Q  153 tatattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||| |||||||||||||||||||||||||    
T  16822774 tatattttagacttaattgcacttttggccccctat 16822809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 189
Target Start/End: Original strand, 38162589 - 38162620
Alignment:
Q  158 tttaggcttaattgcacttttggccccctatg 189  Q
    ||||||||||||||||||||||||||||||||    
T  38162589 tttaggcttaattgcacttttggccccctatg 38162620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 3223429 - 3223462
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| |||||||    
T  3223429 tattttaggcttaattgcacttttggacccctat 3223462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 22052437 - 22052465
Alignment:
Q  160 taggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||    
T  22052437 taggcttaattgcacttttggccccctat 22052465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 38973327 - 38973355
Alignment:
Q  161 aggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||||||||||||||    
T  38973327 aggcttaattgcacttttggccccctatg 38973355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 40687988 - 40687956
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||| |||||||    
T  40687988 attttaggcttaattgcacttttggacccctat 40687956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 12381220 - 12381150
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataac 150  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||||||||||| ||||||||||| ||||||    
T  12381220 ttgttgaattcaat--aaacttaccattttttgtttacttaactagtgtcctaagggcaccggttagcataac 12381150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 12385287 - 12385217
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataac 150  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||||||||||| ||||||||||| ||||||    
T  12385287 ttgttgaattcaat--aaacttaccattttttgtttacttaactagtgtcctaagggcaccggttagcataac 12385217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 40289113 - 40289042
Alignment:
Q  81 ttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataaccct 153  Q
    |||||||||||  |||||||||||||||  ||| ||| ||||||| |||||||||||||||||||||||||||    
T  40289113 ttgaattcaatgcaaacttaccattttttattttcttaactagtg-cctaaaggcaccggttatcataaccct 40289042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 12363976 - 12363906
Alignment:
Q  82 tgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataaccc 152  Q
    |||||||||| | |||||||||||||| ||||  || ||||||||||||| ||||||||||| ||||||||    
T  12363976 tgaattcaatatcaacttaccattttttgtttatttaactagtgtcctaagggcaccggttagcataaccc 12363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 7764501 - 7764468
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||||    
T  7764501 tattttaggcttaattgcacttttggccccctat 7764468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 35580985 - 35580956
Alignment:
Q  159 ttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||    
T  35580985 ttaggcttaattgcacttttggccccctat 35580956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 8774292 - 8774324
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||| |||||||    
T  8774292 attttaggcttaattgcacttttggacccctat 8774324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 51877283 - 51877214
Alignment:
Q  82 tgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataacc 151  Q
    ||||||||||  ||||| || |||||| |||||||| || |||| ||||||||||||||||| |||||||    
T  51877283 tgaattcaatacaaactaactatttttagtttccttaacgagtgccctaaaggcaccggttaacataacc 51877214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 40410194 - 40410162
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||||||    
T  40410194 attttaggcttaattgcacttttggccccctat 40410162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 46934306 - 46934275
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  46934306 ttttaggcttaattgcacttttggccccctat 46934275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 50725065 - 50725034
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  50725065 ttttaggcttaattgcacttttggccccctat 50725034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 50787785 - 50787816
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  50787785 ttttaggcttaattgcacttttggccccctat 50787816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 54476038 - 54476069
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  54476038 ttttaggcttaattgcacttttggccccctat 54476069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 54716471 - 54716502
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  54716471 ttttaggcttaattgcacttttggccccctat 54716502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 383454 - 383511
Alignment:
Q  104 tttttggtttccttgactagtgtcctaaaggcaccggttatcataaccctatatttta 161  Q
    ||||| |||||||| || |||| |||| |||| ||||||| |||||||||||||||||    
T  383454 ttttttgtttccttaaccagtgccctagaggctccggttaacataaccctatatttta 383511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 17258246 - 17258217
Alignment:
Q  160 taggcttaattgcacttttggccccctatg 189  Q
    ||||||||||||||||||||||||||||||    
T  17258246 taggcttaattgcacttttggccccctatg 17258217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 19392031 - 19391990
Alignment:
Q  147 taaccctatattttaggcttaattgcacttttggccccctat 188  Q
    ||||| ||| |||||||||||||||||||||||| |||||||    
T  19392031 taaccttatgttttaggcttaattgcacttttggacccctat 19391990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 27766837 - 27766804
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| |||||||    
T  27766837 tattttaggcttaattgcacttttggacccctat 27766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 12881229 - 12881261
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||| |||||||    
T  12881229 attttaggcttaattgcacttttggacccctat 12881261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 40989713 - 40989685
Alignment:
Q  161 aggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||||||||||||||    
T  40989713 aggcttaattgcacttttggccccctatg 40989685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 46934037 - 46934065
Alignment:
Q  160 taggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||    
T  46934037 taggcttaattgcacttttggccccctat 46934065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 21633387 - 21633354
Alignment:
Q  156 attttaggcttaattgcacttttggccccctatg 189  Q
    ||||||||||||||||||||||||||||||||||    
T  21633387 attttaggcttaattgcacttttggccccctatg 21633354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 3263026 - 3263061
Alignment:
Q  153 tatattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||| |||||||    
T  3263026 tatattttaggcttaattgcacttttggacccctat 3263061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 10741396 - 10741365
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  10741396 ttttaggcttaattgcacttttggccccctat 10741365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 14120909 - 14120980
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataa 149  Q
    ||||| |||||||| |||| ||||||||||| |||||||| |||| |||||| ||| ||| ||||| |||||    
T  14120909 ttgttaaattcaatataaatttaccatttttagtttccttaactaatgtccttaagacactggttaacataa 14120980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 34353359 - 34353414
Alignment:
Q  104 tttttggtttccttgactagtgtcctaaaggcaccggttatcataaccctatattt 159  Q
    |||||||||||||| || | || ||||||||||||||||| |||||||||| ||||    
T  34353359 tttttggtttccttaaccattgccctaaaggcaccggttagcataaccctaaattt 34353414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 3368668 - 3368698
Alignment:
Q  158 tttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||||    
T  3368668 tttaggcttaattgcacttttggccccctat 3368698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 31025871 - 31025901
Alignment:
Q  158 tttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||||    
T  31025871 tttaggcttaattgcacttttggccccctat 31025901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 44078610 - 44078576
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctatg 189  Q
    ||||||||| |||||||||||||||||||||||||    
T  44078610 tattttaggtttaattgcacttttggccccctatg 44078576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 52355 - 52326
Alignment:
Q  160 taggcttaattgcacttttggccccctatg 189  Q
    ||||||||||||||||||||||||||||||    
T  52355 taggcttaattgcacttttggccccctatg 52326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 11188548 - 11188519
Alignment:
Q  155 tattttaggcttaattgcacttttggcccc 184  Q
    ||||||||||||||||||||||||||||||    
T  11188548 tattttaggcttaattgcacttttggcccc 11188519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 41454509 - 41454538
Alignment:
Q  159 ttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||    
T  41454509 ttaggcttaattgcacttttggccccctat 41454538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 9715168 - 9715136
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||| |||||||    
T  9715168 attttaggcttaattgcacttttggacccctat 9715136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 29260215 - 29260290
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataacccta 154  Q
    ||||||||||||||   |||||| |||||||||||||||| ||| ||  ||||| ||||| ||||| ||||||||||    
T  29260215 ttgttgaattcaatgcgaacttatcatttttggtttccttaacttgt-acctaagggcactggttagcataacccta 29260290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 34600545 - 34600573
Alignment:
Q  160 taggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||    
T  34600545 taggcttaattgcacttttggccccctat 34600573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 44245288 - 44245256
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| ||||||    
T  44245288 attttaggcttaattgcacttttggctccctat 44245256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 26920035 - 26920003
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||||||    
T  26920035 attttaggcttaattgcacttttggccccctat 26920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 44807098 - 44807127
Alignment:
Q  158 tttaggcttaattgcacttttggcccccta 187  Q
    ||||||||||||||||||||||||||||||    
T  44807098 tttaggcttaattgcacttttggcccccta 44807127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 31947852 - 31947880
Alignment:
Q  160 taggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||    
T  31947852 taggcttaattgcacttttggccccctat 31947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 32498376 - 32498404
Alignment:
Q  160 taggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||    
T  32498376 taggcttaattgcacttttggccccctat 32498404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 810 - 845
Alignment:
Q  153 tatattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||| |||||||    
T  810 tatattttaggcttaattgcacttttggacccctat 845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 31490777 - 31490832
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaag 133  Q
    ||||||||||||||  |||||||| |||||| |||||||| ||||||||| |||||    
T  31490777 ttgttgaattcaatacaaacttactatttttagtttccttaactagtgtcttaaag 31490832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 12226418 - 12226483
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggtta 143  Q
    |||||||||||||| ||||  ||| ||||||||||||||| || | |||||| | |||||||||||    
T  12226418 ttgttgaattcaatgtaaatatactatttttggtttccttaaccattgtcctgagggcaccggtta 12226483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 26716691 - 26716658
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| |||||||    
T  26716691 tattttaggcttaattgcacttttggacccctat 26716658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 31951521 - 31951488
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| |||||||    
T  31951521 tattttaggcttaattgcacttttggacccctat 31951488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 2173934 - 2173906
Alignment:
Q  161 aggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||||||||||||||    
T  2173934 aggcttaattgcacttttggccccctatg 2173906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 26539134 - 26539058
Alignment:
Q  78 ttgttgaattcaatttaaacttaccatttttggtttccttgactagtgtcctaaaggcaccggttatcataacccta 154  Q
    ||||||||||||||  |||||||| |||||| |||||||| ||||||| ||| | | |||  |||| ||||||||||    
T  26539134 ttgttgaattcaatgcaaacttactatttttagtttccttaactagtgcccttaggacactagttaacataacccta 26539058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 12893281 - 12893250
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||||||||||    
T  12893281 ttttaggcttaattgcacttttggccccctat 12893250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 26858335 - 26858370
Alignment:
Q  153 tatattttaggcttaattgcacttttggccccctat 188  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26858335 tatatttaaggcttaattgcacttttggccccctat 26858370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 233011 - 232978
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| |||||||    
T  233011 tattttaggcttaattgcacttttggacccctat 232978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 13388155 - 13388188
Alignment:
Q  156 attttaggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||| |||||||||||||||    
T  13388155 attttaggcttaattgcagttttggccccctatg 13388188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 3770173 - 3770205
Alignment:
Q  156 attttaggcttaattgcacttttggccccctat 188  Q
    ||||||||||||||||||||||||| |||||||    
T  3770173 attttaggcttaattgcacttttggacccctat 3770205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 19725657 - 19725685
Alignment:
Q  160 taggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||||||    
T  19725657 taggcttaattgcacttttggccccctat 19725685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 55318099 - 55318067
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctatg 189  Q
    |||| ||||||||||||||||||||||||||||    
T  55318099 tttttggcttaattgcacttttggccccctatg 55318067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 199663 - 199693
Alignment:
Q  159 ttaggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||||||||||||||||    
T  199663 ttaggcttaattgcacttttggccccctatg 199693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 25982982 - 25983015
Alignment:
Q  155 tattttaggcttaattgcacttttggccccctat 188  Q
    |||||||||||||||||||||||||| |||||||    
T  25982982 tattttaggcttaattgcacttttggacccctat 25983015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 16537398 - 16537366
Alignment:
Q  154 atattttaggcttaattgcacttttggccccct 186  Q
    ||||||||||||||||||||||||||| |||||    
T  16537398 atattttaggcttaattgcacttttggacccct 16537366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 16628264 - 16628296
Alignment:
Q  154 atattttaggcttaattgcacttttggccccct 186  Q
    ||||||||||||||||||||||||||| |||||    
T  16628264 atattttaggcttaattgcacttttggacccct 16628296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 18363290 - 18363322
Alignment:
Q  157 ttttaggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||||||||| ||||||||    
T  18363290 ttttaggcttaattgcacttttggacccctatg 18363322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 20107 - 20135
Alignment:
Q  161 aggcttaattgcacttttggccccctatg 189  Q
    |||||||||||||||||||||||||||||    
T  20107 aggcttaattgcacttttggccccctatg 20135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University