View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17435_low_3 (Length: 517)

Name: NF17435_low_3
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17435_low_3
NF17435_low_3
[»] chr7 (18 HSPs)
chr7 (7-500)||(26620944-26621437)
chr7 (24-499)||(26608408-26608880)
chr7 (62-500)||(26619012-26619449)
chr7 (109-265)||(30089724-30089880)
chr7 (72-260)||(9242403-9242590)
chr7 (72-254)||(4685322-4685503)
chr7 (65-255)||(20277270-20277461)
chr7 (111-260)||(26224935-26225084)
chr7 (72-254)||(8241598-8241779)
chr7 (109-260)||(10022118-10022269)
chr7 (111-260)||(26205372-26205521)
chr7 (146-260)||(16170265-16170379)
chr7 (130-240)||(16086501-16086611)
chr7 (181-235)||(3374320-3374374)
chr7 (29-128)||(3374523-3374622)
chr7 (155-225)||(27135958-27136028)
chr7 (214-275)||(14803120-14803181)
chr7 (214-275)||(15250114-15250175)
[»] chr1 (16 HSPs)
chr1 (29-276)||(18308126-18308373)
chr1 (62-275)||(39368547-39368761)
chr1 (71-276)||(28636881-28637086)
chr1 (71-260)||(51758747-51758935)
chr1 (71-275)||(897434-897637)
chr1 (117-254)||(1843953-1844089)
chr1 (179-254)||(5911689-5911764)
chr1 (185-260)||(37097371-37097446)
chr1 (121-275)||(12189931-12190085)
chr1 (155-260)||(16222772-16222877)
chr1 (72-245)||(13208621-13208795)
chr1 (180-254)||(15214327-15214401)
chr1 (152-233)||(3399643-3399724)
chr1 (179-276)||(17112903-17113000)
chr1 (200-260)||(15193913-15193973)
chr1 (179-233)||(15204615-15204669)
[»] chr8 (24 HSPs)
chr8 (36-275)||(14997600-14997839)
chr8 (72-253)||(5650863-5651044)
chr8 (72-260)||(19369829-19370016)
chr8 (72-254)||(25638807-25638988)
chr8 (72-260)||(19448442-19448629)
chr8 (72-260)||(19532447-19532634)
chr8 (72-252)||(45356031-45356210)
chr8 (73-260)||(5528737-5528923)
chr8 (64-260)||(17634382-17634577)
chr8 (73-254)||(6801744-6801930)
chr8 (72-254)||(28248998-28249175)
chr8 (72-260)||(25637638-25637824)
chr8 (70-253)||(29345432-29345616)
chr8 (72-260)||(18766911-18767098)
chr8 (62-221)||(6223434-6223594)
chr8 (179-276)||(29553607-29553704)
chr8 (122-254)||(31347349-31347481)
chr8 (137-254)||(6403593-6403710)
chr8 (122-272)||(5000661-5000811)
chr8 (65-160)||(29118477-29118572)
chr8 (110-251)||(31369062-31369203)
chr8 (202-275)||(7292813-7292885)
chr8 (155-223)||(4686159-4686226)
chr8 (211-275)||(29118587-29118650)
[»] chr5 (25 HSPs)
chr5 (72-260)||(17037537-17037724)
chr5 (81-275)||(31571008-31571206)
chr5 (72-254)||(5078983-5079164)
chr5 (70-255)||(19984994-19985179)
chr5 (77-276)||(12042099-12042299)
chr5 (72-254)||(7410824-7411005)
chr5 (111-260)||(23679435-23679584)
chr5 (111-260)||(23855227-23855376)
chr5 (79-276)||(30786245-30786441)
chr5 (74-277)||(38449889-38450089)
chr5 (153-275)||(9354388-9354510)
chr5 (179-260)||(31068988-31069068)
chr5 (114-223)||(42076078-42076187)
chr5 (153-252)||(9333560-9333659)
chr5 (179-275)||(10869417-10869512)
chr5 (191-275)||(18191886-18191970)
chr5 (114-225)||(37233061-37233172)
chr5 (132-239)||(40401987-40402094)
chr5 (229-276)||(42076045-42076092)
chr5 (192-254)||(16411591-16411652)
chr5 (214-275)||(17535350-17535411)
chr5 (72-105)||(23616733-23616766)
chr5 (72-105)||(23848130-23848163)
chr5 (211-275)||(12004567-12004630)
chr5 (216-260)||(31406413-31406457)
[»] chr2 (13 HSPs)
chr2 (72-274)||(7702409-7702611)
chr2 (72-254)||(31342635-31342816)
chr2 (71-276)||(24479130-24479335)
chr2 (75-260)||(30266997-30267181)
chr2 (92-254)||(40016591-40016754)
chr2 (72-260)||(44920952-44921138)
chr2 (72-259)||(7718180-7718366)
chr2 (72-259)||(15513662-15513847)
chr2 (62-241)||(27151147-27151319)
chr2 (114-270)||(11017441-11017597)
chr2 (79-276)||(22966501-22966699)
chr2 (120-275)||(41573372-41573527)
chr2 (115-251)||(26734754-26734887)
[»] chr3 (20 HSPs)
chr3 (71-276)||(27259371-27259567)
chr3 (72-260)||(13845986-13846173)
chr3 (72-252)||(2550168-2550347)
chr3 (72-254)||(1654576-1654757)
chr3 (72-254)||(7407673-7407854)
chr3 (29-260)||(1627822-1628053)
chr3 (72-249)||(2943134-2943309)
chr3 (99-275)||(9633387-9633563)
chr3 (62-275)||(36035451-36035656)
chr3 (72-240)||(35082990-35083163)
chr3 (73-253)||(2179926-2180108)
chr3 (120-249)||(36035294-36035423)
chr3 (112-275)||(5498457-5498619)
chr3 (122-253)||(26707860-26707991)
chr3 (73-168)||(28745061-28745156)
chr3 (137-250)||(16457314-16457427)
chr3 (114-207)||(26735681-26735774)
chr3 (183-275)||(36034998-36035090)
chr3 (152-254)||(1613211-1613313)
chr3 (120-222)||(27713405-27713507)
[»] scaffold0684 (1 HSPs)
scaffold0684 (72-260)||(666-853)
[»] scaffold0069 (1 HSPs)
scaffold0069 (72-260)||(40617-40804)
[»] chr6 (23 HSPs)
chr6 (72-254)||(11936686-11936867)
chr6 (72-254)||(16734805-16734986)
chr6 (72-260)||(12591827-12592014)
chr6 (72-260)||(14669265-14669452)
chr6 (72-260)||(17719642-17719829)
chr6 (72-242)||(11948666-11948835)
chr6 (72-254)||(15361715-15361896)
chr6 (73-271)||(23904270-23904469)
chr6 (73-252)||(1942571-1942750)
chr6 (128-254)||(6684094-6684219)
chr6 (129-276)||(23264471-23264620)
chr6 (123-272)||(9631123-9631273)
chr6 (138-276)||(29667899-29668039)
chr6 (73-233)||(10070676-10070834)
chr6 (110-253)||(34374826-34374971)
chr6 (179-260)||(15690432-15690513)
chr6 (152-241)||(30481226-30481315)
chr6 (179-259)||(4591145-4591225)
chr6 (114-275)||(4485525-4485686)
chr6 (158-254)||(27969921-27970017)
chr6 (179-235)||(10935806-10935862)
chr6 (211-254)||(6673675-6673718)
chr6 (156-257)||(28736608-28736711)
[»] chr4 (18 HSPs)
chr4 (72-260)||(1684871-1685058)
chr4 (72-252)||(43600269-43600448)
chr4 (70-275)||(37750908-37751110)
chr4 (72-260)||(1152038-1152225)
chr4 (75-260)||(47065956-47066140)
chr4 (139-275)||(4881054-4881190)
chr4 (139-259)||(4904125-4904245)
chr4 (109-260)||(53300345-53300496)
chr4 (64-238)||(21539183-21539355)
chr4 (118-275)||(24558959-24559116)
chr4 (73-186)||(27739693-27739807)
chr4 (179-245)||(48464049-48464115)
chr4 (210-275)||(4923689-4923754)
chr4 (194-272)||(26075290-26075368)
chr4 (179-242)||(26075222-26075285)
chr4 (110-207)||(21317485-21317582)
chr4 (222-255)||(37744787-37744820)
chr4 (114-167)||(48465460-48465513)
[»] scaffold0576 (1 HSPs)
scaffold0576 (72-254)||(6699-6880)
[»] scaffold0002 (1 HSPs)
scaffold0002 (134-257)||(446263-446386)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Original strand, 26620944 - 26621437
Alignment:
Q  7 tagataattctgcaacatttttacttctaaaaaattatgaatgtaacannnnnnnagtgttatcggtgatacaaaaagtgttgcaataatgtaacatttt 106  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||    
T  26620944 tagacaattttgcaacatttttacttctaaaaaattatgaatgtaacatttttttagtgttatcggtgatacaacaagtgttgcaataatgtaacatttt 26621043  T
Q  107 atgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaattt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||    
T  26621044 atgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaattt 26621143  T
Q  207 aatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgtgtatttgatcaacattattgaccagatacg 306  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26621144 aatcagtaacatttttcttaatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgtgtatttgatcaacattattgaccaaatacg 26621243  T
Q  307 taacttgttcaatgaatataaaacgtgnnnnnnncttcttataatagtgatcagagggtgtagtttataaaagtggatgtcattgtctcataacttaaat 406  Q
    ||||||||||||||||||||||| |||       |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  26621244 taacttgttcaatgaatataaaaggtgtttttttcttcttataatattgattagagggtgtagtttataaaaatggatgtcattgtctcattacttaaat 26621343  T
Q  407 ctaactctttggcagagggtgtagcttataaaaatggatgtcattgtctcatgacttgaatctaacttttaattgatcaatcttgctttcatgt 500  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26621344 ctaactctttggcagagggtgtagcttataaaaatggattttattgtctcatgacttgaatctatcttttaattgatcaatcttgctttcatgt 26621437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 499
Target Start/End: Original strand, 26608408 - 26608880
Alignment:
Q  24 tttttacttctaaaaaattatgaatgtaacannnnnnnagtgttatcggtgatacaaaaa-gtgttgcaataatgtaacattttatgacactttttgaat 122  Q
    |||||||||||||| |||||| ||| || ||       ||||||| |||||||| ||||| || || |||||||||||||||||  |||||||||||| |    
T  26608408 tttttacttctaaagaattataaatatagcatttttttagtgttaccggtgataaaaaaaagtcttacaataatgtaacattttgcgacactttttgatt 26608507  T
Q  123 gttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacattttt 222  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  26608508 gttatagatagtactataaaatgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacattttt 26608607  T
Q  223 cttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgtgtatttgatcaacattattgaccagatacgtaacttgttcaatgaa 322  Q
    ||||||||  ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| || || ||||||    
T  26608608 cttgatttcataacaattttcaaatgttactagatgtcaattatgttgtagtgtgtatttgatcaacattattgaccaaatacgtaagttatttaatgaa 26608707  T
Q  323 tataaaacgtgnnnnnnncttcttataatagtgatcagagggtgtagtttataaaagtggatgtcattgtctcataacttaaatctaactctttggcaga 422  Q
    ||||||| |||       ||||||| |||||||| |||||||||| | |||||||| |||||||||||||||| | |||| ||||||||| || ||||      
T  26608708 tataaaatgtgttttttccttcttaaaatagtgagcagagggtgttgcttataaaaatggatgtcattgtctcgtgacttgaatctaacttttgggca-- 26608805  T
Q  423 gggtgtagcttataaaaatggatgtcattgtctcatgacttgaatctaacttttaattgatcaatcttgctttcatg 499  Q
      |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  26608806 --gtgtagcttataaaaatggatgtcattgtctcataacttgaatctaacttttgattgatcaatcttgctttcatg 26608880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 62 - 500
Target Start/End: Original strand, 26619012 - 26619449
Alignment:
Q  62 agtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctcttta 161  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  26619012 agtgttatcggtgatacaaaaagtgttacaataatgtagcattttgcgacactttttgaatgttacaaataatactatcaaatgtaactaaagttcttta 26619111  T
Q  162 gtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtcc 261  Q
    ||||||| || ||||  | |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  26619112 gtaacataggatttacct-acaattgttcaaatgttaataaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttactagatgtca 26619209  T
Q  262 attaagttgtagtgtgtatttgatcaacattattgaccagatacgtaacttgttcaatgaatataaaacgtg-nnnnnnncttcttataatagtgatcag 360  Q
    |||| |||||||||||||||||||||||| ||||| ||| |||||||  ||||||||||||||||||| |||        |||||||||||||||| ||     
T  26619210 attatgttgtagtgtgtatttgatcaacaatattggccaaatacgtaggttgttcaatgaatataaaaggtgttttttttcttcttataatagtgaccat 26619309  T
Q  361 agggtgtagtttataaaagtggatgtcattgtctcataacttaaatctaactctttggcagagggtgtagcttataaaaatggatgtcattgtctcatga 460  Q
    || || ||| ||||||||  ||||||||||||||  | |||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  26619310 agagtttagcttataaaaacggatgtcattgtcttgtgacttgaatctaactcttgagcagagggtgtagcttataaaattggatgtcattgtctcatga 26619409  T
Q  461 cttgaatctaacttttaattgatcaatcttgctttcatgt 500  Q
    ||||||||||||| || |||||| ||||||||||||||||    
T  26619410 cttgaatctaactcttgattgattaatcttgctttcatgt 26619449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 30089880 - 30089724
Alignment:
Q  109 gacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaa 208  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||   ||||||||||||||||||| |||||| |||    
T  30089880 gacactttttgaatgttaaaaataatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataa 30089781  T
Q  209 tcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccatta 265  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  30089780 tcagtaacatttttcttgatttagtaacagttttcaagtgttactagatgtcaatta 30089724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 9242403 - 9242590
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||| |     
T  9242403 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttatagataatactataaaatgtaactaaaactctttagtaacatgga 9242501  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||||| |||| | ||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |||||    
T  9242502 ctttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttgatttagttacaattttcaagtgttgctaaatgtc 9242590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 4685322 - 4685503
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||| |  ||    
T  4685322 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaatacggg 4685420  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  4685421 ctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttgatttagttacaattttcaagtgttacta 4685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 20277270 - 20277461
Alignment:
Q  65 gttatcggtgatacaaaaagtgttgcaataatgtaacattttatgaca-ctttttgaatgttacagataatactataaaatgtaactaaagctctttagt 163  Q
    ||||| |||||||||||||||||| ||||||| |||||||||   |||  ||||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  20277270 gttattggtgatacaaaaagtgtttcaataatataacattttgctacattttttttattgttacagataatactatataatgtaactaaagctctttagt 20277369  T
Q  164 aacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactag 255  Q
    ||||   | ||||  ||||||||||| ||||||| ||||||||||| | ||| |||||| |||||||||| ||||||||| |||||||||||    
T  20277370 aacaggtgctttacctaacaattgtttaaatgttactaaatttaattaataatattttttttgatttagttacaattttcgagtgttactag 20277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 26224935 - 26225084
Alignment:
Q  111 cactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatc 210  Q
    |||||||||| |||||||| || || ||||||||| ||||||| |||||||||||||  || ||||  ||| |||||||||| |||| |||||||||||     
T  26224935 cactttttgattgttacaggtagtattataaaatgaaactaaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaatt 26225034  T
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    |||| |||||||||||||||||| ||||||||||||||||| || |||||    
T  26225035 agtatcatttttcttgatttagttacaattttcaagtgttattaaatgtc 26225084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 8241779 - 8241598
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||| |||||| ||| | |||||||| | | |||| ||||||| ||||| |||||||| ||| |||||| |||||| |     
T  8241779 gtgatacaaaaagtgttacaataatctaacatattacggcacttttttatttttacggataatattataatatgtaactgaagttctttaataacatgga 8241680  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    |||||| |||||| ||||||||| ||  |||||| ||||||||||| ||||||| ||||||| ||||||| ||||| ||||||    
T  8241679 ttttatctaacaactgttcaaatattattaaattcaatcagtaaca-ttttcttcatttagttacaatttccaagtattacta 8241598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 10022269 - 10022118
Alignment:
Q  109 gacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaa 208  Q
    |||||||||| | ||||||||||| || |||||||||||||||||  ||||||||||||   | ||||  |||||||||||||  |||| ||||| ||||    
T  10022269 gacactttttaattgttacagatagtaatataaaatgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaa 10022170  T
Q  209 tcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    | ||||||||||||  ||||||||| ||||||||||| |||||||| |||||    
T  10022169 ttagtaacattttttctgatttagttacaattttcaattgttactaaatgtc 10022118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 26205372 - 26205521
Alignment:
Q  111 cactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatc 210  Q
    |||||||||| |||||||  || |||||| ||||| ||||||| |||||||||||||   | ||||  || ||||| ||||| |||| |||||||||||     
T  26205372 cactttttgattgttacaagtagtactatcaaatgaaactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaatt 26205471  T
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    ||||||||||||||||||||||| | ||||||||||||| |||| |||||    
T  26205472 agtaacatttttcttgatttagttataattttcaagtgtcactaaatgtc 26205521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 16170379 - 16170265
Alignment:
Q  146 taactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaa 245  Q
    |||||||| | || ||||||||||| |||||  ||||||||||| || |||| ||||||||||| ||||||| ||||  |||||| || |||||||||||    
T  16170379 taactaaaacactctagtaacattgattttacctaacaattgtttaagtgttactaaatttaattagtaacactttttgtgatttggttacaattttcaa 16170280  T
Q  246 gtgttactagatgtc 260  Q
    ||||| ||| |||||    
T  16170279 gtgttgctaaatgtc 16170265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 16086611 - 16086501
Alignment:
Q  130 ataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatt 229  Q
    ||||||||||||||||| ||| ||||| || ||||||||  | ||||  |||||||| ||||||||||  |||||||||| ||||||| ||||  |||||    
T  16086611 ataatactataaaatgttactgaagctattaagtaacatgagctttacctaacaattattcaaatgttattaaatttaattagtaacagtttttctgatt 16086512  T
Q  230 tagtaacaatt 240  Q
    || ||||||||    
T  16086511 taataacaatt 16086501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 3374374 - 3374320
Alignment:
Q  181 acaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaa 235  Q
    ||||||||||||||||| || |||||||||| |||||||||||||||||| ||||    
T  3374374 acaattgttcaaatgttacttaatttaatcaataacatttttcttgatttggtaa 3374320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 3374622 - 3374523
Alignment:
Q  29 acttctaaaaaattatgaatgtaacannnnnnnagtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttaca 128  Q
    |||||||||||||||| |||||||||       | |||||  |||||||||||||||||| ||||||||| | |||||  || |||||||||||||||||    
T  3374622 acttctaaaaaattataaatgtaacacttttttattgttactggtgatacaaaaagtgttacaataatgtgatattttgcgatactttttgaatgttaca 3374523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 27136028 - 27135958
Alignment:
Q  155 ctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttctt 225  Q
    |||||||||||||  || ||||| |||||||||||||||||||  || || |||||| |||||||||||||    
T  27136028 ctctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttttctt 27135958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 14803120 - 14803181
Alignment:
Q  214 aacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||||||||||||||| ||| |||||||  |||||||||| || |||  |||||||||    
T  14803120 aacatttttcttgatttagttacatttttcaaccgttactagatctcaattttgttgtagtg 14803181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 15250114 - 15250175
Alignment:
Q  214 aacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||||||||||||||| ||| |||||||  |||||||||| || |||  |||||||||    
T  15250114 aacatttttcttgatttagttacatttttcaaccgttactagatctcaattttgttgtagtg 15250175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 29 - 276
Target Start/End: Complemental strand, 18308373 - 18308126
Alignment:
Q  29 acttctaaaaaattatgaatgtaacannnnnnnagtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttaca 128  Q
    |||||| ||||||||| |||||||||       ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  18308373 acttctcaaaaattataaatgtaacatttttctagtgttatcggtgatacaaaaagtgttacaataatgtaacattttgtgacactttttgaatgttaca 18308274  T
Q  129 gataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgat 228  Q
     | |||||||||||||||||||||||| ||| |||||||  || ||||  ||||||||||  |||||||  ||| | ||||| |||||||||||||||||    
T  18308273 aacaatactataaaatgtaactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgttaataattgtaatctgtaacatttttcttgat 18308174  T
Q  229 ttagtaacaattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    ||||||||||||||||| |||||||||||||| |||| ||| ||||||    
T  18308173 ttagtaacaattttcaaatgttactagatgtcaattatgttttagtgt 18308126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 62 - 275
Target Start/End: Original strand, 39368547 - 39368761
Alignment:
Q  62 agtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactat-aaaatgtaactaaagctcttt 160  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||| ||||||||||| ||||||||||| |||||||||    
T  39368547 agtgttaccggtgatacaaaaagtgttacaataatgtaacattttgcgacactttttaaatgttactgataatactataaaaatgtaactgaagctcttt 39368646  T
Q  161 agtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    |||| |||  | |||   ||||||||||  ||||||  |||| |||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  39368647 agtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattagtaacatttttcttgatttagtaacatttttcatgggttactagatgtc 39368746  T
Q  261 cattaagttgtagtg 275  Q
     |||| |||| ||||    
T  39368747 aattatgttgcagtg 39368761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 71 - 276
Target Start/End: Complemental strand, 28637086 - 28636881
Alignment:
Q  71 ggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattg 170  Q
    |||||||||||||||||| ||||||||||||||| |  |||||||||||| |||   ||||| |||||||||||||||||||| |||||||| |||| ||    
T  28637086 ggtgatacaaaaagtgttacaataatgtaacattgtgcgacactttttgattgtcgtagatattactataaaatgtaactaaatctctttagcaacagtg 28636987  T
Q  171 gttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttg 270  Q
      ||||  |||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||| || ||||||||||| |  |||| ||||    
T  28636986 actttacctaacaattattcaaatgttactaaattgaattagtaacatttttcttgatttagttacaatttttaaatgttactagatcttaattatgttg 28636887  T
Q  271 tagtgt 276  Q
    ||||||    
T  28636886 tagtgt 28636881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 71 - 260
Target Start/End: Complemental strand, 51758935 - 51758747
Alignment:
Q  71 ggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattg 170  Q
    |||||||||||||||||| ||||||||||||||||    ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |       
T  51758935 ggtgatacaaaaagtgttacaataatgtaacatttgca-acactttttaattgttacagataatactataaaatgtaactaaaactctttagtaatacga 51758837  T
Q  171 gttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    | ||||  ||| |||||||| | |||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  51758836 gctttacctaataattgttcgagtgttgctaaatttaattactaacatttttcttgatttagttacaattttcaaatgttactaaatgtc 51758747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 897637 - 897434
Alignment:
Q  71 ggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattg 170  Q
    |||||||||||||||||| |||||||||||||||||  || | ||||| ||||||||| |||||  ||||||||||||||| ||||||||||||||| ||    
T  897637 ggtgatacaaaaagtgttacaataatgtaacattttgcgagaattttttaatgttacaaataattgtataaaatgtaactatagctctttagtaaca-tg 897539  T
Q  171 gttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttg 270  Q
       |||  |||||||||||||| |||| ||||||||||| || |||||||||||| ||||||||||||||||||| ||| |||| || |  |||| ||||    
T  897538 aacttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaacaattttcaactgtaactatatcttaattatgttg 897439  T
Q  271 tagtg 275  Q
    |||||    
T  897438 tagtg 897434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 1844089 - 1843953
Alignment:
Q  117 ttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaac 216  Q
    |||| |||||||||||||||||||||||| || |||||| ||| |||||||| || ||||  ||||||||||||||||||| ||||||| ||||||||||    
T  1844089 ttgattgttacagataatactataaaatgcaattaaagcccttcagtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaac 1843990  T
Q  217 atttttcttgatttagtaacaattttcaagtgttacta 254  Q
    |||||||||  |  ||| |||||||| |||||||||||    
T  1843989 atttttcttattccagttacaatttt-aagtgttacta 1843953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 5911689 - 5911764
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  5911689 taacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttacta 5911764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 37097371 - 37097446
Alignment:
Q  185 ttgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttactaaatgtc 37097446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 121 - 275
Target Start/End: Complemental strand, 12190085 - 12189931
Alignment:
Q  121 atgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacattt 220  Q
    |||||||  ||||||||||||||  | |||||| |||||||||||||  || ||||  ||||||||||||||||||| ||||||||||| ||||| ||||    
T  12190085 atgttactaataatactataaaaaattactaaaactctttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatattt 12189986  T
Q  221 ttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||||||| ||| |||| || |||| |||  | || |||| |||||||||    
T  12189985 ttcttgatttagttacattttttaattgtttctaattctcaattatgttgtagtg 12189931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 16222877 - 16222772
Alignment:
Q  155 ctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    |||||||||||||  || ||||  |||||||| ||||| |||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||    
T  16222877 ctctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgttacta 16222778  T
Q  255 gatgtc 260  Q
     |||||    
T  16222777 aatgtc 16222772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 13208795 - 13208621
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaacta--aagctctttagtaacatt 169  Q
    |||||||||||||| || ||||||  ||||||||  | ||||||||| | |||||| |||| || |||||||| ||||||  || | |||||||||||      
T  13208795 gtgatacaaaaagttttacaataagataacatttgtt-acacttttttattgttactgatagtattataaaatataactataaaacactttagtaacacg 13208697  T
Q  170 ggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaa 245  Q
    |||||||  ||||||| |||||| || | ||||||||||| ||||||||||||||| ||||| | |||||||||||    
T  13208696 ggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaatttaattacaattttcaa 13208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 15214401 - 15214327
Alignment:
Q  180 aacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||  |||||||||||||||||||    
T  15214401 aacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttacta 15214327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 3399724 - 3399643
Alignment:
Q  152 aagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagt 233  Q
    ||||| ||||||||||| | |||||  ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  3399724 aagctatttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgatttagt 3399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 17113000 - 17112903
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    |||||||||||||| |||| | ||||||||  ||||  ||||||||||||||||||||||||||||| | ||||||||| || |||| ||||||||||    
T  17113000 taacaattgttcaagtgttacaaaatttaactagtactatttttcttgatttagtaacaattttcaattattactagatttcaattatgttgtagtgt 17112903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 15193973 - 15193913
Alignment:
Q  200 taaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    |||||||||| |||||||||||||||||||| ||  | ||||||||||||||||| |||||    
T  15193973 taaatttaattagtaacatttttcttgatttcgttgctattttcaagtgttactaaatgtc 15193913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 15204669 - 15204615
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagt 233  Q
    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||||    
T  15204669 taacaattgttcaagtgttactaaatttagttagcaacatttttcttgatttagt 15204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 14997839 - 14997600
Alignment:
Q  36 aaaaattatgaatgtaacannnnnnnagtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataata 135  Q
    ||||||||| |||||||||       ||||||| ||||||||||||||||||| |||||||||||  ||||  |||| |||||||||||||||| |||||    
T  14997839 aaaaattataaatgtaacatttttttagtgttaccggtgatacaaaaagtgttacaataatgtaatgttttgcgacattttttgaatgttacagttaata 14997740  T
Q  136 ctataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaa 235  Q
    |||||||| |||||||||||||||||||||||| |||||||  |||||||| | |||||||| |||| ||||| |||||||||||||||||| |||||||    
T  14997739 ctataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacatttttcttgaattagtaa 14997640  T
Q  236 caattttcaagtgttactagatgtccattaagttgtagtg 275  Q
     ||||||||||||| |||||||||| || | |||||||||    
T  14997639 taattttcaagtgtcactagatgtcaatcatgttgtagtg 14997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 5650863 - 5651044
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||  ||    
T  5650863 gtgatacaaaaagtgttacaataatgtaacattttgtgacactatttgaatgttatagataataccataaaatgcaactaaagcttttttgtaacaaggg 5650962  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttact 253  Q
    |||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||    
T  5650963 ttttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttcttgatttagtaatagttttcaagtgttact 5651044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 19369829 - 19370016
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||  |     
T  19369829 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaacacgga 19369927  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  19369928 ctttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 19370016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 25638988 - 25638807
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||| ||||||| |||||| |||| |||||||||||||||||||| | |||||||||||| ||    
T  25638988 gtgatacaaaaagtgttacaataaggtaccatttgc-gacattttttgattgttacggatagtactataaaatgtaactaaaacactttagtaacatggg 25638890  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    |||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  25638889 ttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttacta 25638807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 19448629 - 19448442
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||  |     
T  19448629 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttacagataatactataaaatataactaaaactctttagtaacacgga 19448531  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  19448530 ctttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 19448442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 19532447 - 19532634
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||  |     
T  19532447 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttacagataatactataaaatataactaaaactctttagtaacacgga 19532545  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  19532546 ctttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 19532634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 252
Target Start/End: Original strand, 45356031 - 45356210
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  45356031 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 45356129  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttac 252  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  45356130 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 73 - 260
Target Start/End: Complemental strand, 5528923 - 5528737
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggt 172  Q
    |||||||||||||||| ||||||||| | ||||   |||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||  |      
T  5528923 tgatacaaaaagtgttacaataatgttatatttgc-gacactttttaactgttacagataatactgtaaaatgtaactaaaactctttagtaacacagac 5528825  T
Q  173 tttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    ||||| |||||||||||  | |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  5528824 tttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaaatgtc 5528737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 17634382 - 17634577
Alignment:
Q  64 tgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagt 163  Q
    |||||| ||||||||| |||||||| ||||||||||| ||||   |||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  17634382 tgttattggtgatacataaagtgttacaataatgtaatatttgc-gacactttttgattgttacagatagtactataaaatgtaactaaatttctttagt 17634480  T
Q  164 aacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    ||||  || ||||  || ||||||||||| ||||  |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  17634481 aacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaatgtc 17634577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 6801744 - 6801930
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttatgaca-----ctttttgaatgttacagataatactataaaatgtaactaaagctctttagtaaca 167  Q
    |||||||||||||||| |||||||||||||||||  ||||     |||||| |||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  6801744 tgatacaaaaagtgttacaataatgtaacattttgcgacagtacacttttttaatgttacagctaatactctaaaatgtaactaaaactctttagtaaca 6801843  T
Q  168 ttggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
      || ||||  |||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||    
T  6801844 ggggctttacctaacaattgttcaactgttactaaatttaattagtaacatttttattgatttagtaatagttttcaagtgttacta 6801930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 28248998 - 28249175
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| ||||||||    |||||||||||||||||||| | |||||||||||  ||    
T  28248998 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttacag----tactataaaatgtaactaaaacactttagtaacacggg 28249092  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  28249093 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttacta 28249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 25637824 - 25637638
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||||||| |||||    ||||||||| | ||||||| ||||||||||||||||||||||||  ||||||||||||  ||    
T  25637824 gtgatacaaaaagtgttacaataatgtagcatttgca-acactttttaattgttaca-ataatactataaaatgtaactaaaattctttagtaacacggg 25637727  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  |||||||||||| | |||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||| |||||    
T  25637726 ctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaatttagttacaattttcaagtgttactaaatgtc 25637638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 253
Target Start/End: Complemental strand, 29345616 - 29345432
Alignment:
Q  70 cggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctc-tttagtaacat 168  Q
    ||||||||||| ||||||| |||||||||||||||||   |||| || ||| ||||||| ||||||||||||||||||||||||| |  |||||||| |     
T  29345616 cggtgatacaagaagtgttacaataatgtaacattttgcaacacattctgattgttacaaataatactataaaatgtaactaaagtttgtttagtaagag 29345517  T
Q  169 tggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttact 253  Q
     || ||||  ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||    
T  29345516 gggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgatttagttacaattttcgagtgttact 29345432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 18767098 - 18766911
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||| | ||||  | |||||||||||||||||||||||| |||||||||||||        
T  18767098 gtgatacaaaaaatgttacaataatgtaacattt-atgacactttttaattgttctatataatactataaaatgtaactaaaactctttagtaacacgta 18767000  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  |||||||||||  | |||||| ||||||||| | ||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  18766999 ctttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttcttgatttagttacaattttcaagtgttgctaaatgtc 18766911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 6223594 - 6223434
Alignment:
Q  62 agtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacacttttt-gaatgttacagataatactataaaatgtaactaaagctcttt 160  Q
    |||||||  |||||| ||||||||||| |||||||||||||||||  |||||||||| |||||||||| |||||| |||||| |||||||||| ||||||    
T  6223594 agtgttactggtgattcaaaaagtgttacaataatgtaacattttgcgacacttttttgaatgttacatataatattataaagtgtaactaaaactcttt 6223495  T
Q  161 agtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttt 221  Q
    |||||||   | ||||  |||||||| | |||||||| |||||||||||||||||| ||||    
T  6223494 agtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagtaacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 29553704 - 29553607
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||| || || || | ||||||||||    
T  29553704 taacaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaattttcaattgttactaaatctcaatcatgttgtagtgt 29553607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 31347481 - 31347349
Alignment:
Q  122 tgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttt 221  Q
    ||||||| |||||  |||||||||| ||| ||| |  |||||||||  || ||||| ||||||||| ||||||||| ||||||||||| |||| ||||||    
T  31347481 tgttacaaataatgatataaaatgttactgaagatggttagtaacacaggatttatctaacaattgatcaaatgttactaaatttaattagtagcatttt 31347382  T
Q  222 tcttgatttagtaacaattttcaagtgttacta 254  Q
    ||||||||| || ||||||||||| ||||||||    
T  31347381 tcttgatttggttacaattttcaattgttacta 31347349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 6403710 - 6403593
Alignment:
Q  137 tataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaac 236  Q
    |||||||||| ||| ||||| |||| |||||  || ||||  ||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||| ||    
T  6403710 tataaaatgttactgaagctttttaataacacgggctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttac 6403611  T
Q  237 aattttcaagtgttacta 254  Q
    || |||||| ||||||||    
T  6403610 aaatttcaattgttacta 6403593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 5000811 - 5000661
Alignment:
Q  122 tgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttt 221  Q
    |||||| |||||||||||||  | | |||  |||||||||||||||  ||||| |  |||| |||| ||||||||| ||||||||||| ||||||| |||    
T  5000811 tgttactgataatactataacgtcttactctagctctttagtaacacaggtttcacctaactattgctcaaatgttactaaatttaattagtaacaattt 5000712  T
Q  222 tcttgatttagtaacaattttcaagtgttactagatgtccattaagttgta 272  Q
    |  |||| |||||||||||||||| ||| ||||||| || |||| ||||||    
T  5000711 tgatgatgtagtaacaattttcaattgtaactagatctcaattatgttgta 5000661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 29118477 - 29118572
Alignment:
Q  65 gttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctcttt 160  Q
    |||| ||||||||||||||||||| |||| ||||||||||||   |||| ||||||||||||||||||||||| |||| ||| ||| || ||||||    
T  29118477 gttaccggtgatacaaaaagtgttacaatgatgtaacattttgcaacacgttttgaatgttacagataatactgtaaagtgtgacttaaactcttt 29118572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 31369062 - 31369203
Alignment:
Q  110 acactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaat 209  Q
    |||||||| |||||| |  |||||| ||||||||||||||| || ||||||||||||||  | ||||  ||||| ||||| ||||||  ||||| |||||    
T  31369062 acacttttggaatgtgattgataatcctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaat 31369161  T
Q  210 cagtaacatttttcttgatttagtaacaattttcaagtgtta 251  Q
     |||||||||| || |||||||||  || ||||||| |||||    
T  31369162 tagtaacatttatcgtgatttagtttcatttttcaaatgtta 31369203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 7292885 - 7292813
Alignment:
Q  202 aatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||||||||| || ||||| |||| |||||||||    
T  7292885 aatttaattagtaacatttt-catgattcagtaacaattttcaagtgttattaaatgtcaattatgttgtagtg 7292813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 4686226 - 4686159
Alignment:
Q  155 ctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttc 223  Q
    |||||||||||||| |||||| ||||| | |||| |||||| |||||||| |||| |||||||||||||    
T  4686226 ctctttagtaacataggttttgtttaaaagttgt-caaatgatgctaaatataattagtaacatttttc 4686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 29118587 - 29118650
Alignment:
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||| |||||| ||||| ||||||||| |||||||||||||| || ||||  ||||||||    
T  29118587 agtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtagtg 29118650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 17037724 - 17037537
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||     
T  17037724 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaacactga 17037626  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  17037625 ctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagttacgattttcaagtgttactaaatgtc 17037537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 81 - 275
Target Start/End: Complemental strand, 31571206 - 31571008
Alignment:
Q  81 aaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttattta 180  Q
    |||||||| |||||||||||||||||  |||| |||||||||||||| |||||||||||| |||| | |||||||||||||||||||| |||||||  ||    
T  31571206 aaagtgttacaataatgtaacattttgcgacattttttgaatgttaccgataatactatataatggatctaaagctctttagtaacatgggttttaccta 31571107  T
Q  181 acaattgttc----aaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||| |    | ||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||||    
T  31571106 acaattgtacatatatatgttactaattttaatcagtaacatttttcttgttttaataacaattttcaagtgttactagatgtcaattatgttgtagtg 31571008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 5078983 - 5079164
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||    ||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  5078983 gtgatacaaaaagtgttacaataaggtaccatttgca-acactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 5079081  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  5079082 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttacta 5079164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 19985179 - 19984994
Alignment:
Q  70 cggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacatt 169  Q
    ||||||||||||||||||| |||||||||||||||||   ||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||| |     
T  19985179 cggtgatacaaaaagtgttacaataatgtaacattttgcaacactttttgattattacatataatactataaaatgtaactaaaactctttagtaacctg 19985080  T
Q  170 ggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactag 255  Q
    |  ||||  |||||||| |||||||||| |||||| |||| ||||||||||| ||||||||||| || |||||| |||||||||||    
T  19985079 gactttacctaacaattattcaaatgttactaaatctaattagtaacattttccttgatttagttaccattttcgagtgttactag 19984994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 77 - 276
Target Start/End: Original strand, 12042099 - 12042299
Alignment:
Q  77 acaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggtttta 176  Q
    |||||||||||| |||||||||| ||||||  |||||||||| | | ||||| |||||| ||||||||||||||||| ||||||||||| |  |||||      
T  12042099 acaaaaagtgttacaataatgtatcattttgcgacacttttttattattacaaataataatataaaatgtaactaaaactctttagtaata--ggtttct 12042196  T
Q  177 tt---taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtag 273  Q
    ||   ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||| ||| |  |||| |||||||    
T  12042197 ttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttcttgatttagttacaattttcaaatattactggatcttaattatgttgtag 12042296  T
Q  274 tgt 276  Q
    |||    
T  12042297 tgt 12042299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 7411005 - 7410824
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||    ||||||||||| ||||||| ||  |||||||||||||||||||| | |||||||||||  ||    
T  7411005 gtgatacaaaaagtgttacaataaggtaccatttgca-acactttttgattgttacaaattgtactataaaatgtaactaaaacactttagtaacacggg 7410907  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||| || ||||||||    
T  7410906 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagttacaattttgaaatgttacta 7410824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 23679584 - 23679435
Alignment:
Q  111 cactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatc 210  Q
    |||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||     ||||| ||| |||||||| |||||||| |||||||||     
T  23679584 cactttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaatt 23679485  T
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    | ||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  23679484 aataacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 23679435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 23855227 - 23855376
Alignment:
Q  111 cactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatc 210  Q
    |||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||     ||||| ||| |||||||| |||||||| |||||||||     
T  23855227 cactttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaatt 23855326  T
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    | ||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  23855327 aataacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 23855376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 79 - 276
Target Start/End: Complemental strand, 30786441 - 30786245
Alignment:
Q  79 aaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatt 178  Q
    |||||||||| |||||||| |  |||||  |||||||||| | ||||||| ||||||  ||||||||| |||||| || ||||||||||  |  ||||      
T  30786441 aaaaagtgttacaataatggat-attttgcgacacttttttattgttacaaataataacataaaatgtgactaaatctttttagtaacaaggcatttacc 30786343  T
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |  |||| ||||||||||    
T  30786342 taacaattattcaaatgttactaaattgaatcagtaacatttttcttgattaagttacaattttcaagtgttactagatcttaattatgttgtagtgt 30786245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 38449889 - 38450089
Alignment:
Q  74 gatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaa----agctctttagtaacatt 169  Q
    ||||||||||||||| ||| ||||  ||||||| |||||  |||| ||||||||| ||||||| |||||||||||||||    |||| |||||||||||     
T  38449889 gatacaaaaagtgttacaaaaatgatacattttgtgacaactttttaatgttacatataataccataaaatgtaactaattaaagctgtttagtaacatg 38449988  T
Q  170 ggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagtt 269  Q
     | ||||  |||||||| | |||||||| || | |||||       ||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||    
T  38449989 agctttacctaacaattatacaaatgttactgattttaa-------catttttcttgatttggtaacaattttcatgtgttactagatgtcaattatgtt 38450081  T
Q  270 gtagtgtg 277  Q
    ||||||||    
T  38450082 gtagtgtg 38450089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 9354388 - 9354510
Alignment:
Q  153 agctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttac 252  Q
    |||| ||||||||||| || ||||  ||||||||| |||||||||  |||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||    
T  9354388 agctttttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttac 9354487  T
Q  253 tagatgtccattaagttgtagtg 275  Q
    || || || || | |||||||||    
T  9354488 taaatctcaatcatgttgtagtg 9354510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 31068988 - 31069068
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  31068988 taacaattgttcaa-tgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaaatgtc 31069068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 42076187 - 42076078
Alignment:
Q  114 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagt 213  Q
    ||||| |||||||| |||||||||||||||| |  || ||||| ||||||||||| |  ||||| ||||||||||||||||||| ||||||||||| |||    
T  42076187 tttttaaatgttaccgataatactataaaatattcctgaagctttttagtaacatggactttatctaacaattgttcaaatgttactaaatttaattagt 42076088  T
Q  214 aacatttttc 223  Q
    |||| |||||    
T  42076087 aacaattttc 42076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 9333560 - 9333659
Alignment:
Q  153 agctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttac 252  Q
    |||| ||||||||||| |  ||||  ||||||||| ||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||    
T  9333560 agctttttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaattttcaattgttac 9333659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 10869512 - 10869417
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||| |||||||| || |||  |||||| || |||| |||||||||    
T  10869512 taacaattgttcaaatgttactaaatttaattagtaacaattttcatgatttagt-acaatttttaattgtatctagatctcaattatgttgtagtg 10869417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 18191886 - 18191970
Alignment:
Q  191 aaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||| || || ||||  ||||||||    
T  18191886 aaatgttactaaatttaattagtaacatttttcttaatttagttacaattttcaattgttactaaatctcaattattttgtagtg 18191970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 37233172 - 37233061
Alignment:
Q  114 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagt 213  Q
    ||||| |||||||| |||||||||||||||||| ||| || || ||||||||||  |  | ||  ||||||||| ||||||||| ||||||||||| |||    
T  37233172 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 37233073  T
Q  214 aacatttttctt 225  Q
    ||| ||||||||    
T  37233072 aacttttttctt 37233061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 40401987 - 40402094
Alignment:
Q  132 aatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgattta 231  Q
    |||||||||||||||  || ||||| ||||| ||||  |  ||||  ||||||||||||||| ||  ||||||||||| ||||||||||||||| |||||    
T  40401987 aatactataaaatgttgctgaagctttttagcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttctttattta 40402086  T
Q  232 gtaacaat 239  Q
    || |||||    
T  40402087 gtcacaat 40402094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 42076092 - 42076045
Alignment:
Q  229 ttagtaacaattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    ||||||||||||||||| ||||||||||| || |||| ||||||||||    
T  42076092 ttagtaacaattttcaattgttactagatctcaattatgttgtagtgt 42076045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 16411652 - 16411591
Alignment:
Q  192 aatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    |||||| ||| || |||||||||||||||||| |||||||||||  |||||||| ||||||||    
T  16411652 aatgttactagatataatcagtaacatttttcgtgatttagtaa-tattttcaaatgttacta 16411591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 17535411 - 17535350
Alignment:
Q  214 aacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||||||||||||||| ||| |||||||  |||||||||| || |||  |||||||||    
T  17535411 aacatttttcttgatttagttacatttttcaaccgttactagatctcaattttgttgtagtg 17535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 23616733 - 23616766
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattt 105  Q
    ||||||||||||||||| ||||||||||||||||    
T  23616733 gtgatacaaaaagtgttacaataatgtaacattt 23616766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 23848130 - 23848163
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattt 105  Q
    ||||||||||||||||| ||||||||||||||||    
T  23848130 gtgatacaaaaagtgttacaataatgtaacattt 23848163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 12004567 - 12004630
Alignment:
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||||||||||||||||| | || |||||| |||||||| || || |||| |||||||||    
T  12004567 agtaacatttttcttgatttagttagaa-tttcaattgttactaaatttcaattatgttgtagtg 12004630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 31406413 - 31406457
Alignment:
Q  216 catttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    |||||||||||||||||| ||||||||||| |||| ||| |||||    
T  31406413 catttttcttgatttagttacaattttcaaatgttgctaaatgtc 31406457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 72 - 274
Target Start/End: Complemental strand, 7702611 - 7702409
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||    
T  7702611 gtgatacaaaaagtgttataataatgtaacattttacgacaatttttaaatgttacagataatactacaaaatgtaactaaagctctttagtaatatggg 7702512  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgt 271  Q
     ||||  |||||||||| |||||||| |||| |||||| | |||||||||| || ||||||||| |||||||| ||||||||||||||| |||| |||||    
T  7702511 ctttacctaacaattgtacaaatgttactaattttaattaataacattttttttaatttagtaataattttcatgtgttactagatgtcaattatgttgt 7702412  T
Q  272 agt 274  Q
    |||    
T  7702411 agt 7702409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 31342635 - 31342816
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||    ||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  31342635 gtgatacaaaaagtgttacaataaggtaccatttgca-acactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 31342733  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  31342734 ctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttacta 31342816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 71 - 276
Target Start/End: Complemental strand, 24479335 - 24479130
Alignment:
Q  71 ggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattg 170  Q
    |||| |||||||| |||| ||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||       
T  24479335 ggtggtacaaaaaatgttacaatagtgtaaccttttacgacactttttgaatgttatagataatactataaaatataactaaagctctttagtaacacga 24479236  T
Q  171 gttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttg 270  Q
    | ||||  ||| ||||||||||||||| ||||||||||| ||||||| || |||||||||||||| |||||||||||||||||| || || |||| |||     
T  24479235 gctttacctaagaattgttcaaatgttactaaatttaattagtaacagttatcttgatttagtaataattttcaagtgttactatatctcaattatgtta 24479136  T
Q  271 tagtgt 276  Q
    ||||||    
T  24479135 tagtgt 24479130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 30267181 - 30266997
Alignment:
Q  75 atacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttt 174  Q
    |||||||||||||| ||||| ||||||||||   |||||||||||| |||||| |||| |||||||||||||||||||| |||||| ||||||  || ||    
T  30267181 atacaaaaagtgttacaatagtgtaacatttgc-gacactttttgattgttacggatagtactataaaatgtaactaaaactctttggtaacacgggctt 30267083  T
Q  175 tatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    ||  |||||||||||||  |||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  30267082 tacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaattttcaagtgttactaaatgtc 30266997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 40016754 - 40016591
Alignment:
Q  92 ataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaag-ctctttagtaacattggttttatttaacaattgttc 190  Q
    |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||| |  |  ||||  |||||||| |||    
T  40016754 ataatgtaacattttacgatactttttgaatgttacagataatacaataaaatgtaattaaaatctctttagtaatagggtctttacctaacaattattc 40016655  T
Q  191 aaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  40016654 aaatgttactaaatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 40016591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 44921138 - 44920952
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||| ||||||||||   |||| ||||| | |||||| |||| |||||||||||||||||||| |||||||||||||   |    
T  44921138 gtgatacaaaaagtgttacaatagtgtaacatttgc-gacatttttttattgttacggatagtactataaaatgtaactaaaactctttagtaacacgag 44921040  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  ||||||||||| |  |||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  44921039 ctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt-ttgatttagttacaattttcaagtgttactaaatgtc 44920952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 7718366 - 7718180
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||||| |||||||   |||| ||||| | | |||| |||| ||||||||||||||| |||| |||||||||||||  |     
T  7718366 gtgatacaaaaagtgttacaataatgcaacatttgc-gacatttttttattattacggatagtactataaaatgtaattaaaactctttagtaacacgga 7718268  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgt 259  Q
     ||||| |||||||||||||  |||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||| ||||    
T  7718267 ctttatctaacaattgttcatgtgttactaaatttaattagtaatatttttcttgatttagttacaattttcaagtattactaaatgt 7718180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 15513847 - 15513662
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||||||||||||  ||||||||||||||    |||||||||||| || |||||||| |||||||||||||||||||| || ||||||||||   |    
T  15513847 gtgatacaaaaagtgttctaataatgtaacattgc--gacactttttgattgatacagatagtactataaaatgtaactaaatctttttagtaacacgag 15513750  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgt 259  Q
     ||||  |||||||||||||| |||| | ||||||||  ||||||||||||||||||||| | |||||||| || |||||||| ||||    
T  15513749 ctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttcttgatttacttacaatttttaattgttactaaatgt 15513662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 27151147 - 27151319
Alignment:
Q  62 agtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctcttta 161  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||| ||||| |||||||| ||||||  ||||||||||||||| ||  ||||||||||    
T  27151147 agtgttaccggtgatacaaaaagtgttacaataaggtaacattttacgacacattttgaattttacag--aatactataaaatgttaccgaagctcttta 27151244  T
Q  162 gtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattt 241  Q
    || |||| ||  ||     |||||||| ||| |||  |||| |||||| ||| |||||||||||||||||||||||||||    
T  27151245 gtgacatgggcgtt-----acaattgtacaagtgtcactaattttaattagtgacatttttcttgatttagtaacaattt 27151319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 11017597 - 11017441
Alignment:
Q  114 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagt 213  Q
    ||||| |||||||| |||||||||||||| ||| ||| ||||| ||||||||||  |  ||||  ||||||||| ||||||||| ||||||||||| |||    
T  11017597 tttttaaatgttactgataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagt 11017498  T
Q  214 aacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttg 270  Q
    |||| ||||||| ||||||||||  ||||||| ||||||||||| || |||| ||||    
T  11017497 aacaattttctttatttagtaacggttttcaattgttactagatctcaattatgttg 11017441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 276
Target Start/End: Complemental strand, 22966699 - 22966501
Alignment:
Q  79 aaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatt 178  Q
    |||||||||||| |||  ||||||||||  | || |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||  || ||||      
T  22966699 aaaaagtgttgctatag-gtaacattttgcggcatttttcgaatgttacagataatactctaaaatgtaactaaaggtctttagtaacaggggctttacc 22966601  T
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacattt--ttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    ||||||||||| ||||||  |||||||| || ||||| ||||  || || ||||||||| | |||||||||||||||| || || ||||  |||||||||    
T  22966600 taacaattgtttaaatgtaactaaatttcattagtaatattttattttttatttagtaatagttttcaagtgttactaaatctcaattatattgtagtgt 22966501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 41573527 - 41573372
Alignment:
Q  120 aatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatt 219  Q
    ||||||||  ||||||||||||||||| | | |||   ||||||||||  || ||||  ||||||||||| || |||| ||||||||||| |||||||||    
T  41573527 aatgttactaataatactataaaatgttattgaagtaatttagtaacacggggtttacctaacaattgtttaactgttactaaatttaattagtaacatt 41573428  T
Q  220 tttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||||||||| ||| ||||  | |||||||| || || |||  |||||||||    
T  41573427 tttcttgatttagttacattttttgaatgttactaaatctcaattttgttgtagtg 41573372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 26734887 - 26734754
Alignment:
Q  115 ttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagta 214  Q
    ||||||||||||| ||||||| | |||||||  |||||||||||||| ||| || |  ||||  |||||||| ||||||| |||||||||||||| | ||    
T  26734887 ttttgaatgttactgataatattgtaaaatgatactaaagctctttaataatatggactttacctaacaattattcaaatattgctaaatttaattaata 26734788  T
Q  215 acatttttcttgatttagtaacaattttcaagtgtta 251  Q
    |  ||||||||||||   ||||||||||||| |||||    
T  26734787 agttttttcttgatt---taacaattttcaaatgtta 26734754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 27259371 - 27259567
Alignment:
Q  71 ggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattg 170  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |    
T  27259371 ggtgatacaaaaagtgttacaataatgtaacattttacgacactttttgaatgttacagataatactctaaaatgtaactaaagctctttagtaacaaag 27259470  T
Q  171 gttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttg 270  Q
    |           ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| | ||||||| |||||||| || || |||| ||||    
T  27259471 g---------gaaattgttcaaatgttactaaatttaattagtaacattttgcttgatttagtaatagttttcaattgttactaaatctcaattatgttg 27259561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 13846173 - 13845986
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  13846173 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 13846075  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  13846074 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 13845986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 2550347 - 2550168
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| ||||||| ||| |||||||||||||||||||| | |||||||||||  ||    
T  2550347 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttacaaatagtactataaaatgtaactaaaacactttagtaacacagg 2550249  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttac 252  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  2550248 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 1654757 - 1654576
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||||||| |||| |||||| ||| |||||   |||||||||||| ||||||||||| |||||||||||||||||||| | ||||| |||||  ||    
T  1654757 gtgatacaaaaaatgttacaataaggtaccatttgc-gacactttttgattgttacagatagtactataaaatgtaactaaaacactttaataacacagg 1654659  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  1654658 ctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaattgttacta 1654576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 7407673 - 7407854
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| |||||| |||| |||||||||||||||||||| | |||||||||||  ||    
T  7407673 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttactgatagtactataaaatgtaactaaaacactttagtaacacggg 7407771  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  7407772 ctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttcttgatttagttacaattttcaagtgttacta 7407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 1627822 - 1628053
Alignment:
Q  29 acttctaaaaaattatgaatgtaacannnnnnnagtgttatcggtgatacaaaaagtgttgcaa-taatgtaacattttatgacactttttgaatgttac 127  Q
    |||||||||||||||| |||||||||       | |||||   |||||| ||||||| || ||| |||||||||||||   |||||||||| | ||||||    
T  1627822 acttctaaaaaattataaatgtaacacttttttattgttactagtgatataaaaagtattacaaataatgtaacatttgc-gacactttttaattgttac 1627920  T
Q  128 agataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttga 227  Q
    | |||||||||||||||||||||||| |||||| ||||||  |  |||| ||||||||||||||| |||| ||||||||||| ||||| |||||||||||    
T  1627921 atataatactataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagtaatatttttcttga 1628020  T
Q  228 tttagtaacaattttcaagtgttactagatgtc 260  Q
    |||||| |||||||||||||||||||| |||||    
T  1628021 tttagttacaattttcaagtgttactaaatgtc 1628053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 2943134 - 2943309
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||| |||||||||    |||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||  ||    
T  2943134 gtgatacaaaaagtgttacaatagtgtaacattgc--gacactttttaattgttacagataatactataaaatgtaactaaaacactttagtaacacggg 2943231  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgt 249  Q
     || |  |||||||||||| |||||| ||||||||||| ||||||||||||||||||||| | |||| ||||||||||    
T  2943232 cttaacctaacaattgttcgaatgttactaaatttaattagtaacatttttcttgatttaattacaaatttcaagtgt 2943309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 9633387 - 9633563
Alignment:
Q  99 aacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttg 198  Q
    ||||||||  |||| ||||||||||||||| ||||| || ||||||||||||||| |||||||||||||  || ||||  ||||||||||| ||||||      
T  9633387 aacattttgcgacattttttgaatgttacatataatgctctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaa 9633486  T
Q  199 ctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||||| |||||||||||| | |||||||||| | |||||||||||||||| || || |||| |||||||||    
T  9633487 ctaaatttaattagtaacatttttttcgatttagtaatagttttcaagtgttactaaatctcaattatgttgtagtg 9633563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 62 - 275
Target Start/End: Complemental strand, 36035656 - 36035451
Alignment:
Q  62 agtgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctcttta 161  Q
    ||||||| ||||||| |||||  |||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||| ||||| |    
T  36035656 agtgttaccggtgatccaaaagatgttacaataatgtaacattttatgacaatttttaaatgttacatataatactataaaatgtagctaaaactcttaa 36035557  T
Q  162 gtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtcc 261  Q
     |||||| || ||||  ||||| |        || | |||||||| |||||||  |||||||||||| ||||||||||||| |||||||||||||||||     
T  36035556 ataacatgggctttacctaacatt--------tgatactaaatttgatcagtattatttttcttgatatagtaacaattttgaagtgttactagatgtca 36035465  T
Q  262 attaagttgtagtg 275  Q
    |||| |||||||||    
T  36035464 attatgttgtagtg 36035451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 35083163 - 35082990
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttat-----gacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaac 166  Q
    ||||| ||||||||||| ||||||| ||||||||| |     |||||||||| ||||| | ||||||||||||||| |||||||||||||| ||  ||||    
T  35083163 gtgatgcaaaaagtgttacaataatataacattttgttttgtgacactttttaaatgtcagagataatactataaattgtaactaaagctcatttctaac 35083064  T
Q  167 attggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaatt 240  Q
    |  |||||||| |||||||||||||||| || ||||||||| | | |||||||||||||||||| |||||||||    
T  35083063 aagggttttatctaacaattgttcaaatattactaaatttatttactaacatttttcttgattttgtaacaatt 35082990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 2180108 - 2179926
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggt 172  Q
    |||||||||||||||| |||||| |||||||||||  |    |||||||||||| |||||| |||||||||| ||||||||||||||||||||||  |      
T  2180108 tgatacaaaaagtgttacaataacgtaacattttactagtaattttgaatgttaaagataacactataaaatataactaaagctctttagtaacagggaa 2180009  T
Q  173 tttatttaacaattgttcaaatgttgctaaatttaatcagtaaca--tttttcttgatttagtaacaattttcaagtgttact 253  Q
    ||||   || ||||||||||||| | ||||||||||||| |||||  ||||| || |||||||||||||||||| ||||||||    
T  2180008 tttacccaagaattgttcaaatgattctaaatttaatcattaacatttttttttttatttagtaacaattttcaggtgttact 2179926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 36035423 - 36035294
Alignment:
Q  120 aatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatt 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||   | ||||  |||||||||| ||| |||| ||||||||||| ||||  |||    
T  36035423 aatgttacatataatactataaaatgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagtattatt 36035324  T
Q  220 tttcttgatttagtaacaattttcaagtgt 249  Q
    ||||||||||||||| ||||||| ||||||    
T  36035323 tttcttgatttagtaccaattttgaagtgt 36035294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 112 - 275
Target Start/End: Complemental strand, 5498619 - 5498457
Alignment:
Q  112 actttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatca 211  Q
    ||||| ||||||||||  ||||||| ||||||| | || ||| |||||||||||||| |||||||  ||||||||||||| | ||| ||||||||||| |    
T  5498619 actttatgaatgttactaataatac-ataaaatattaccaaaactctttagtaacataggttttacctaacaattgttcagaagttactaaatttaatta 5498521  T
Q  212 gtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||||||||||||||||| ||| |||| || |||||||| || || |||| |||||||||    
T  5498520 gtaacatttttcttgatttagttacattttttaattgttactaaatctcaattatgttgtagtg 5498457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 26707991 - 26707860
Alignment:
Q  122 tgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttt 221  Q
    |||||| || |||||||| |||||| ||| || |||||||||||||  |  ||||  ||||||||||||||||||| ||||||||||| |||||||||||    
T  26707991 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacctaacaattgttcaaatgttactaaatttaattagtaacatttt 26707892  T
Q  222 tcttgatttagtaacaattttcaagtgttact 253  Q
    ||||||||||||||| |||||||| |||||||    
T  26707891 tcttgatttagtaaccattttcaaatgttact 26707860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 28745156 - 28745061
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacat 168  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  28745156 tgatacaaaaagtgttacaataatgtaaaattttgcgacactttttgaatgttacaaataatactctaaaatgtaactaaaactctttagtaacat 28745061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 16457314 - 16457427
Alignment:
Q  137 tataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaac 236  Q
    |||||||||| ||| ||||| ||||||||||   | ||||  ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  16457314 tataaaatgttactgaagctttttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttac 16457413  T
Q  237 aattttcaagtgtt 250  Q
    ||||||||| ||||    
T  16457414 aattttcaattgtt 16457427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 26735774 - 26735681
Alignment:
Q  114 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaattta 207  Q
    ||||| ||||||||  |||||||||| |||||| | | ||||||||||||||||| | |||||  ||||||||||||||||||| |||||||||    
T  26735774 ttttttaatgttactaataatactatgaaatgttattgaagctctttagtaacatggattttacctaacaattgttcaaatgttactaaattta 26735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 36035090 - 36034998
Alignment:
Q  183 aattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||| ||| |||| ||||||||||| ||||  |||||||||||||||||| ||||||| |||||| | |||||||| |||| |||||||||    
T  36035090 aattgtacaattgttactaaatttaattagtattatttttcttgatttagtaccaattttgaagtgtcattagatgtcaattatgttgtagtg 36034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 1613211 - 1613313
Alignment:
Q  152 aagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgtta 251  Q
    ||||| ||||||||||  || ||||  ||| ||||| |||| |||| ||||||||| | ||||||||||||||||||||||| ||| ||||||| |||||    
T  1613211 aagctatttagtaacaggggctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttcttgatttagttacatttttcaactgtta 1613310  T
Q  252 cta 254  Q
    |||    
T  1613311 cta 1613313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 27713405 - 27713507
Alignment:
Q  120 aatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatt 219  Q
    ||||||||  ||||||||||||||| |  ||||| || ||||||||||| ||||||   |||||||| || ||||||| ||||||||||| |||||| ||    
T  27713405 aatgttactaataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaacttt 27713504  T
Q  220 ttt 222  Q
    |||    
T  27713505 ttt 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 666 - 853
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||| |     
T  666 gtgatacaaaaagtgttccaataatgtaacatttgc-gacactttttaattgttatagataatactataaaatgtaactaaaactctttagtaacatgga 764  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |||||    
T  765 ctttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaattttcaagtgttgctaaatgtc 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 40617 - 40804
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| | |||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |     
T  40617 gtgatacaaaaagtgttacgataatgtaacatttga-gacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaacatgga 40715  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||| || ||| |||||    
T  40716 ctttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaattttcaagtattgctaaatgtc 40804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 11936686 - 11936867
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||| ||||| | ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  11936686 gtgatacaaaaagtgttacaataaggtaccatttgc-gacatttttttattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 11936784  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  11936785 ctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttacta 11936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 16734986 - 16734805
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||| |||||||| |||||| ||| |||||   || ||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  16734986 gtgatacagaaagtgttacaataaggtaccatttgc-gatactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 16734888  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  16734887 ctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttacta 16734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 12592014 - 12591827
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||  ||    
T  12592014 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttacagataatactataaattgtaactaaaactctttagtaacacggg 12591916  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  |||||||||||| |  ||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  12591915 ctttacctaacaattgttcgagcgttactaaatttaattactaacatttttcttgatttagttacaattttcaagtgttactaaatgtc 12591827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 14669265 - 14669452
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||  |     
T  14669265 gtgatacaaaaagtgttacaataatgtaacatttg-tgacactttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgga 14669363  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||  |||||||| ||| | |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  14669364 ctttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 14669452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 17719642 - 17719829
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||  |     
T  17719642 gtgatacaaaaagtgttacaataatgtaacatttgc-gacactttttaattgttacagataatactataaattgtaactaaaactctttagtaacacgga 17719740  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  17719741 ctttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 17719829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 11948666 - 11948835
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||| ||||| | ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  11948666 gtgatacaaaaagtgttacaataaggtaccatttgc-gacatttttttattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 11948764  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaatttt 242  Q
     ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  11948765 ctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttt 11948835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 15361896 - 15361715
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||||||||| || |||||| ||| |||||    ||||||||||| ||||||||||| |||||||||||||||||||| |  ||||||||||  ||    
T  15361896 gtgatacaaaaagttttacaataaggtaccatttgca-acactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccgg 15361798  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  15361797 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttacta 15361715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 73 - 271
Target Start/End: Original strand, 23904270 - 23904469
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgta-acattttatgacactttttgaatgttac-agataatactataaaatgtaactaaagctctttagtaacattg 170  Q
    |||||||||||||||| |||||||||  |||| || |||||||||||||||||||  ||||||||||||||| ||||| |||| |||||| |||| |  |    
T  23904270 tgatacaaaaagtgttacaataatgtttacatcttgtgacactttttgaatgttaagagataatactataaagtgtaa-taaacctcttttgtaagaggg 23904368  T
Q  171 gttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttg 270  Q
    | ||||  ||||||||||||||||||| ||||||| | | |||||| |||||||| |||||||| |||||||||||||||||||||| || |||| ||||    
T  23904369 gctttacctaacaattgttcaaatgttactaaattgatttagtaacttttttcttcatttagtagcaattttcaagtgttactagatctcaattatgttg 23904468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 73 - 252
Target Start/End: Complemental strand, 1942750 - 1942571
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggt 172  Q
    ||||||||||  |||| |||||||||||||||||  ||||  |||| | ||||||||||||||||||||||||||||||||| | |||| |||||  |||    
T  1942750 tgatacaaaagatgttacaataatgtaacattttgcgacatattttaattgttacagataatactataaaatgtaactaaagatatttaataacaaaggt 1942651  T
Q  173 tttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttac 252  Q
    ||||  || |||||| |||||||||  ||||||| |||||||| ||||||||||||||||| |||||| |||| ||||||    
T  1942650 tttacctagcaattgctcaaatgttattaaattttatcagtaatatttttcttgatttagttacaattatcaaatgttac 1942571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 6684219 - 6684094
Alignment:
Q  128 agataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttga 227  Q
    |||||||||||||||||||||||||| |||||||||||||| |  ||||  ||||||| |||| | |||| ||||||||||| |||||||||||||||||    
T  6684219 agataatactataaaatgtaactaaaactctttagtaacatggactttacctaacaat-gttcgagtgttactaaatttaattagtaacatttttcttga 6684121  T
Q  228 tttagtaacaattttcaagtgttacta 254  Q
    || ||| |||||||| |||||||||||    
T  6684120 ttaagttacaatttttaagtgttacta 6684094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 23264471 - 23264620
Alignment:
Q  129 gataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgat 228  Q
    |||||||||||||| | |  || ||||||||||||||||  | |||||  |||||||||||| |||||| ||||||||||| ||||||| ||||||||||    
T  23264471 gataatactataaagttttgctgaagctctttagtaacacggattttacctaacaattgttcgaatgttactaaatttaattagtaacaattttcttgat 23264570  T
Q  229 ttagtaacaattttca--agtgttactagatgtccattaagttgtagtgt 276  Q
    ||||||||||||||||  | | ||||||||| || |||| ||||||||||    
T  23264571 ttagtaacaattttcaatattcttactagatctcaattatgttgtagtgt 23264620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 9631123 - 9631273
Alignment:
Q  123 gttacagataatactataaaa-tgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttt 221  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||  || | |   ||||||||||||||||||| ||||||||| | |||||| || |    
T  9631123 gttacagataatactctaaaaatgtaactaaaactctatagtaacaggggctatgcctaacaattgttcaaatgttactaaatttacttagtaacgttct 9631222  T
Q  222 tcttgatttagtaacaattttcaagtgttactagatgtccattaagttgta 272  Q
    |||||||||||||| | |||||||||||||||| || || |||| ||||||    
T  9631223 tcttgatttagtaatagttttcaagtgttactaaatctcaattatgttgta 9631273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 29667899 - 29668039
Alignment:
Q  138 ataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttc--ttgatttagtaa 235  Q
    ||||||||| |||||| ||||||| |||||   | ||||  ||||||||||||||||||| ||||||||||| |||||||||||||  ||||||| || |    
T  29667899 ataaaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttttgatttcgtta 29667998  T
Q  236 caattttcaagtgttactagatgtccattaagttgtagtgt 276  Q
    |||||||||| |||||| |||| || |||| ||||||||||    
T  29667999 caattttcaattgttacaagatctcaattatgttgtagtgt 29668039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 10070834 - 10070676
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggt 172  Q
    |||||||||||||||| ||||||||||||||||   |||||||||  | ||||||| |||||||||||||||||||||||| || ||||||||||  |      
T  10070834 tgatacaaaaagtgttacaataatgtaacatttgc-gacacttttaaattgttacaaataatactataaaatgtaactaaaact-tttagtaacacggac 10070737  T
Q  173 tttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagt 233  Q
    ||||  |||||||| ||  | ||||  |||||||||| ||||||| |||| ||||||||||    
T  10070736 tttacgtaacaattatttgagtgttattaaatttaattagtaacaattttgttgatttagt 10070676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 34374971 - 34374826
Alignment:
Q  110 acactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaa--ttgttcaaatgttgctaaattta 207  Q
    ||||||| ||||||||||  ||||||||||||||| | ||| || |||||||||||||  | ||||   ||||||  ||||||||||||| | |||| ||    
T  34374971 acactttatgaatgttactcataatactataaaatattactcaaactctttagtaacacagattttgcctaacaattttgttcaaatgttacaaaatata 34374872  T
Q  208 atcagtaacatttttcttgatttagtaacaattttcaagtgttact 253  Q
    || ||||||||||||||||||||| | ||| |||| || |||||||    
T  34374871 attagtaacatttttcttgatttaattacattttttaattgttact 34374826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 15690513 - 15690432
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    |||||||||||  | |||  ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  15690513 taacaattgtttgagtgtcactaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaatgtc 15690432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 30481226 - 30481315
Alignment:
Q  152 aagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattt 241  Q
    |||||||||||||||||    ||||| ||| | |||||||| |||| ||| ||||||| || ||||||||||||||||||||||||||||    
T  30481226 aagctctttagtaacatgatctttatctaaaatttgttcaattgttactagatttaattagcaacatttttcttgatttagtaacaattt 30481315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 4591225 - 4591145
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgt 259  Q
    |||||||||| |||| |||  | | ||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  4591225 taacaattgtacaaaggttattgattttaatcggtaacatttttcttgatttagtaataattttcaaatgttactaaatgt 4591145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 275
Target Start/End: Original strand, 4485525 - 4485686
Alignment:
Q  114 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagt 213  Q
    ||||| ||||||||  ||||| ||||| | ||| |||||| || |||| |||||  |  ||||  |||||||| ||||||| || ||||||||||| |||    
T  4485525 ttttttaatgttactaataattctatagattgttactaaaactatttaataacacggactttacctaacaattattcaaatattactaaatttaattagt 4485624  T
Q  214 aacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    | |||||| |||||||||||  || ||||||| || |||||||| |  |||| |||||||||    
T  4485625 accattttccttgatttagttgcatttttcaactgatactagatcttaattatgttgtagtg 4485686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 27969921 - 27970017
Alignment:
Q  158 tttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    ||||||||||| |  ||||  ||||| ||||| ||||||||||||||| ||  |||||||| ||||||| ||| || ||||||||||| ||||||||    
T  27969921 tttagtaacatagactttacctaacatttgttgaaatgttgctaaattgaaatagtaacatatttcttgctttggttacaattttcaaatgttacta 27970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 10935806 - 10935862
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaa 235  Q
    ||||||||||||||||||| ||  || |||| ||||||||||||| |||||||||||    
T  10935806 taacaattgttcaaatgttactggatataattagtaacatttttcatgatttagtaa 10935862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 6673675 - 6673718
Alignment:
Q  211 agtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||    
T  6673675 agtaacatttttcttgatttagttacatttttcaactgttacta 6673718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 28736608 - 28736711
Alignment:
Q  156 tctttagtaacattggttttatttaacaattgttcaaatgttgc--taaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttact 253  Q
    |||||||| |||  || |||| ||||||||||||||||||| ||  || || |||||||||  ||||||| ||||||| || || |||| || |||||||    
T  28736608 tctttagttacaaaggctttacttaacaattgttcaaatgtcgctatatatataatcagtactatttttcgtgatttaatagcattttttaaatgttact 28736707  T
Q  254 agat 257  Q
    ||||    
T  28736708 agat 28736711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 1684871 - 1685058
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| ||||| ||||||||||   |||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||  |     
T  1684871 gtgatacaaaaagtgttacaatattgtaacatttgc-gacactttttaattgttacagataatactataaattgtaactaaaactctttagtaacacgga 1684969  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  1684970 ctttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtc 1685058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 43600448 - 43600269
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||| ||| |||||   |||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||  ||    
T  43600448 gtgatacaaaaagtgttacaataaggtaccatttgc-gacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacggg 43600350  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttac 252  Q
     ||||  |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  43600349 ctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 37750908 - 37751110
Alignment:
Q  70 cggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacatt 169  Q
    ||||||||||||||||||| ||||||||||||||||   |||| ||||||||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  37750908 cggtgatacaaaaagtgttacaataatgtaacatttgc-gacattttttgaatgt-atagataatactataaaatgtaactaaagcttcttagtaacatt 37751005  T
Q  170 ggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagtt 269  Q
    || ||||| |||||||||  |||||||| || | |||||| |||||||||||| |||||||||| ||||||||||  ||||||| |||||| |||| |||    
T  37751006 ggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt-ttgatttagtgacaattttcatatgttactggatgtcaattatgtt 37751104  T
Q  270 gtagtg 275  Q
    ||||||    
T  37751105 gtagtg 37751110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 1152225 - 1152038
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||| | |||||||||||||| |||||| |||||||||| |||||||||||||  |     
T  1152225 gtgatacaaaaagtgttacaataatgtaacatttga-gacactttttaattgttacagataatattataaactgtaactaaaactctttagtaacacgga 1152127  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
     ||||| |||||||||||  | |||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||| |||||    
T  1152126 ctttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttcttaatttagttacaattttcaagtgttgctaaatgtc 1152038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 75 - 260
Target Start/End: Original strand, 47065956 - 47066140
Alignment:
Q  75 atacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttt 174  Q
    |||||||||||||| ||||| ||||||||||   |||||||||||| |||||| |||| |||||||||||||||||||| |||||| ||||||  || ||    
T  47065956 atacaaaaagtgttacaatagtgtaacatttgc-gacactttttgattgttacggatagtactataaaatgtaactaaaactctttggtaacacgggctt 47066054  T
Q  175 tatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    ||  |||||||||||||  |||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  47066055 tacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaattttcaagtgttactaaatgtc 47066140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 4881054 - 4881190
Alignment:
Q  139 taaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaa 238  Q
    ||||||| ||||||||| |||||||||||  |  ||||  |||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  4881054 taaaatgcaactaaagcactttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttcttgatttagtaacaa 4881153  T
Q  239 ttttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||||||||| |||||| |||| |||||||||    
T  4881154 ttttcaagtgttactggatgtcaattatgttgtagtg 4881190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 4904125 - 4904245
Alignment:
Q  139 taaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaa 238  Q
    ||||||||||||||||| |||||||||||   | ||||  |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  4904125 taaaatgtaactaaagcactttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagtaacaa 4904224  T
Q  239 ttttcaagtgttactagatgt 259  Q
    |||| |||||||||| |||||    
T  4904225 tttttaagtgttactggatgt 4904245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 53300496 - 53300345
Alignment:
Q  109 gacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaa 208  Q
    |||||||||||| |||||| |||| ||| |||||||||||||||| |||||| ||||||  || ||||  ||||||||||| |  |||| ||||||||||    
T  53300496 gacactttttgattgttacggatagtacgataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaa 53300397  T
Q  209 tcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtc 260  Q
    | | ||||||||||||||||||| | |||||||||||||||||||| |||||    
T  53300396 ttactaacatttttcttgatttaattacaattttcaagtgttactaaatgtc 53300345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 21539183 - 21539355
Alignment:
Q  64 tgttatcggtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagt 163  Q
    |||||| |||||| ||||| ||||| ||||||| | |||||||  || | ||| | | |||||| |||||||||| |||||||||||||| |||||||||    
T  21539183 tgttattggtgatgcaaaaggtgttacaataatattacattttgcgatattttcttattgttac-gataatactaaaaaatgtaactaaatctctttagt 21539281  T
Q  164 aacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaa 238  Q
    ||||  ||  |||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  21539282 aacaa-ggacttatctaacaattgtttaaatgttactaaatttaatcagtaacattttccttgatttagttacaa 21539355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 24558959 - 24559116
Alignment:
Q  118 tgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaaca 217  Q
    |||||||||| |||||||||||||||| | ||||||  ||||||||||||  |   |||  ||||||| ||||||||||| ||||||||||| |||||||    
T  24558959 tgaatgttactgataatactataaaatatcactaaaattctttagtaacacagccgttacctaacaatcgttcaaatgttactaaatttaattagtaaca 24559058  T
Q  218 tttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    |||||||||||||||| ||| |||| || |||||||| || || |||| ||| |||||    
T  24559059 tttttcttgatttagttacattttttaattgttactaaatctcaattatgttctagtg 24559116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 27739693 - 27739807
Alignment:
Q  73 tgatacaaaaagtgttgcaataatgtaacattttat-gacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    ||||||||||| |||| ||||||||||| | ||| | |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  27739693 tgatacaaaaaatgttacaataatgtaaaagtttttcgacactttttgattcttacagataatactataaaatgtaactaaagctcttcagtaacatggg 27739792  T
Q  172 ttttatttaacaatt 186  Q
     ||||  ||||||||    
T  27739793 ctttacctaacaatt 27739807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 48464115 - 48464049
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaa 245  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||||||    
T  48464115 taacaattgttcaaatgttactaaatttaattagtaacatttttatttatttagtaacaattttcaa 48464049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 4923689 - 4923754
Alignment:
Q  210 cagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgtagtg 275  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||  |||| |||||||||    
T  4923689 cagtaacatttttcttgatttagtaacaatttttaagtgttactggatgttaattatgttgtagtg 4923754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 26075290 - 26075368
Alignment:
Q  194 tgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactagatgtccattaagttgta 272  Q
    |||| ||||||||| | ||||||  |||||||||| |||||||||||||||| ||||| ||||| || |||| ||||||    
T  26075290 tgttactaaatttacttagtaaccattttcttgatctagtaacaattttcaattgttattagatttcaattatgttgta 26075368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 26075222 - 26075285
Alignment:
Q  179 taacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaatttt 242  Q
    |||||||||||| |||||| | ||||||| | ||||||| |||||||||| || ||||||||||    
T  26075222 taacaattgttcgaatgttacaaaatttacttagtaacaattttcttgatctaataacaatttt 26075285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 21317582 - 21317485
Alignment:
Q  110 acactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaattta 207  Q
    |||||||||||||||||  | |||||| ||||||||| | | ||||  ||||||||||  |  ||||  ||||||||||| ||||||| |||||||||    
T  21317582 acactttttgaatgttattggtaatacaataaaatgttagtgaagcattttagtaacacagcctttacctaacaattgttgaaatgttactaaattta 21317485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 37744787 - 37744820
Alignment:
Q  222 tcttgatttagtaacaattttcaagtgttactag 255  Q
    ||||||||||||||||||||||||||||| ||||    
T  37744787 tcttgatttagtaacaattttcaagtgttgctag 37744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 48465513 - 48465460
Alignment:
Q  114 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaaca 167  Q
    ||||| |||||||| |||||||||||||||||| ||| || || ||||||||||    
T  48465513 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaaca 48465460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 6880 - 6699
Alignment:
Q  72 gtgatacaaaaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacattgg 171  Q
    |||||||||||||| || |||||| ||| |||||    ||||||||||| ||||||||||| |||||||||||||||||||| |  ||||||||||  ||    
T  6880 gtgatacaaaaagttttacaataaggtaccatttgca-acactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccgg 6782  T
Q  172 ttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttacta 254  Q
     ||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  6781 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttacta 6699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 446263 - 446386
Alignment:
Q  134 tactataaaatgtaactaaagctctttagtaacattggttttatttaacaattgttcaaatgttgctaaatttaatcagtaacatttttcttgatttagt 233  Q
    ||||||||| ||| |||||||||||||||||| || |  |||   ||||||||||||||||||| | |||||||||  |||||| |||   |||||||||    
T  446263 tactataaagtgttactaaagctctttagtaatatggacttttcctaacaattgttcaaatgttaccaaatttaattggtaacaatttgtatgatttagt 446362  T
Q  234 aacaattttcaagtgttactagat 257  Q
     ||||| ||| | |||||||||||    
T  446363 tacaatcttcgattgttactagat 446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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