View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17435_low_4 (Length: 395)
Name: NF17435_low_4
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 455850 - 455467
Alignment:
| Q |
12 |
agagagaccaagacgagttttatcttcttaactagtgctctaagagatgcataaccctaaagttttttaccatggtgaagttggtttttaaccaataaa- |
110 |
Q |
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| T |
455850 |
agagagaccaagacgagttttatcttcttaactagtgctctacgagacgcataaccctaaagttttttaccatggtgaagttggtttttaaccaataaat |
455751 |
T |
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| Q |
111 |
--------gcacatggtttcatcgtacgtaggccctcaacctcaacctcacccactaaaagtgatacttatattgtcacaatcaaatacctgcaaaatta |
202 |
Q |
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| T |
455750 |
caaataaagcacatggtttcatcgtacgtaggtcctcaacctcaacctcacccactaaaagtgatacttatattgttacaatcaaatacctgcaaaatta |
455651 |
T |
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| Q |
203 |
gccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtcatcattgtttttgaagg |
302 |
Q |
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| T |
455650 |
gccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtcatcattgtttttgaagg |
455551 |
T |
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| Q |
303 |
catcttatgatctgcatttagtagttttggacccttcaataatgtcatg------gacactgctccagtaacacatatcattgt |
380 |
Q |
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| T |
455550 |
catcttatgatctgcatttagtagttttggacccttcaataatgtcatggacagtgacactgctccagtaacacatatcattgt |
455467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 380
Target Start/End: Complemental strand, 467890 - 467751
Alignment:
| Q |
241 |
agacaaccaatcaaccaattctcatcactttc---caaggttgtggtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggaccct |
337 |
Q |
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| T |
467890 |
agacatccaagcaaccaattctcatcacttcctaataaggttgtggccatgattgattttgaaagtatctt---atctgcatttagtagttttggaccct |
467794 |
T |
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| Q |
338 |
tcaataatgtcatggacactgctccagtaacacatatcattgt |
380 |
Q |
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| T |
467793 |
tcaacaatgcaattgacactgctccacttacacatataattgt |
467751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 374
Target Start/End: Complemental strand, 474979 - 474791
Alignment:
| Q |
186 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc |
285 |
Q |
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| T |
474979 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggcc |
474880 |
T |
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| Q |
286 |
atcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatat |
374 |
Q |
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| T |
474879 |
atgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacatat |
474791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 381
Target Start/End: Complemental strand, 446935 - 446740
Alignment:
| Q |
186 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaatt---ctcatcactttccaaggttgtg |
282 |
Q |
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| T |
446935 |
aaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtg |
446836 |
T |
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| Q |
283 |
gtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtt |
381 |
Q |
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| T |
446835 |
gccatgattgattttgaagatatatttt---ctgcatttaaaagttttggaccctttaacaatgcgatggacattgctccacaaacacatattattgtt |
446740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 381
Target Start/End: Original strand, 27491398 - 27491590
Alignment:
| Q |
186 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc |
285 |
Q |
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||||||||||||||| ||||||| ||| | |||||||| ||||| || |||| | ||| |||| ||||||||||||||||||| | ||||||||| |
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| T |
27491398 |
aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttcctaaggttgtgcca |
27491497 |
T |
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| Q |
286 |
atcattgtttttgaaggcat-cttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtt |
381 |
Q |
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| T |
27491498 |
atgattgattttgaagttatgctt----tctgcatttagcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgtt |
27491590 |
T |
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