View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17435_low_6 (Length: 371)
Name: NF17435_low_6
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17435_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 35094618 - 35094289
Alignment:
| Q |
19 |
taaccgtcctagaataaagcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggcaaagcctatccaataattaa |
118 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35094618 |
taactgtccttgaataaagcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggtaaagcctatccaataattaa |
35094519 |
T |
|
| Q |
119 |
gtgaaaacatgaactatcatgccatccactttctgaagatattgtcattattcgtgggtataaacatatgcaacttccaatgtatgacattgaaaattat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094518 |
gtgaaaacatgaactatcatgccatccactttctgaagatattgtcattatttgtgggtataaacatatgcaacttccaatgtatgacattgaaaattat |
35094419 |
T |
|
| Q |
219 |
taacagtaactagcagacatggaaatatggaaatattgctaccaaaataacagttgaataatcaataccgattgtctctgaaacaggttgagaaactggc |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35094418 |
taacagtaactagcagacatggaaatgtggaaatattgctaccaaaataacagttgaataatcaataccgattgtctgtgaaacaggttgagaaactggc |
35094319 |
T |
|
| Q |
319 |
ggcctttgagctgcttgaatgttagtaaga |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35094318 |
ggcctttgagctgcttgaatgttagtaaga |
35094289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 11268019 - 11267904
Alignment:
| Q |
19 |
taaccgtcctagaataaagcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggcaaagcctatccaataattaa |
118 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11268019 |
taaccgtccttgcataaagcaaatattcaaagttgatctcatagggaaaggtgactaaaggtgctgattcactcaatggcaaagcctatccaatcgttaa |
11267920 |
T |
|
| Q |
119 |
gtgaaaacatgaacta |
134 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11267919 |
gtgaaaacatgaacta |
11267904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 31173407 - 31173517
Alignment:
| Q |
19 |
taaccgtcctagaataaagcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggcaaagcctatccaataattaa |
118 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
31173407 |
taaccgccctcgcataaagcaaaaattcaaagttgatctcatagggaaaggtgactaaaggtgctgattcactcaattgcaaagcctat-----agttaa |
31173501 |
T |
|
| Q |
119 |
gtgaaaacatgaacta |
134 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31173502 |
gtgaaaacatgaacta |
31173517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 32586861 - 32586779
Alignment:
| Q |
266 |
taacagttgaataatcaataccgattgtctctgaaacaggttgagaaactggcggcctttgagctgcttgaatgttagtaaga |
348 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32586861 |
taacagttgaataattaataccttttgtctgtgaaacaggttgaacaactggccgcctttgagctgcttgaatgttagtaaga |
32586779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University