View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17435_low_7 (Length: 349)

Name: NF17435_low_7
Description: NF17435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17435_low_7
NF17435_low_7
[»] chr5 (3 HSPs)
chr5 (3-334)||(41871581-41871912)
chr5 (2-64)||(6061531-6061593)
chr5 (4-38)||(12349548-12349582)
[»] chr4 (2 HSPs)
chr4 (2-56)||(39418104-39418158)
chr4 (2-70)||(44478770-44478838)
[»] chr2 (2 HSPs)
chr2 (1-38)||(14120827-14120864)
chr2 (3-40)||(34512716-34512753)
[»] chr8 (4 HSPs)
chr8 (2-66)||(5074900-5074964)
chr8 (2-59)||(39972135-39972192)
chr8 (5-65)||(13520690-13520750)
chr8 (5-65)||(13610225-13610285)
[»] chr3 (4 HSPs)
chr3 (1-56)||(29213346-29213401)
chr3 (2-38)||(4298407-4298443)
chr3 (2-66)||(12060035-12060099)
chr3 (2-70)||(50673149-50673217)
[»] chr7 (1 HSPs)
chr7 (21-59)||(33901337-33901375)
[»] chr6 (1 HSPs)
chr6 (2-56)||(31490671-31490725)
[»] chr1 (3 HSPs)
chr1 (1-57)||(21268277-21268333)
chr1 (1-57)||(36596648-36596704)
chr1 (2-38)||(40289163-40289199)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 334
Target Start/End: Complemental strand, 41871912 - 41871581
Alignment:
Q  3 aatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccctaaaataacacttgttcctctcaagaagaaatataaa 102  Q
    |||||||||||||||||||||| || |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41871912 aatacaacatttttaaatttgtgctcttaaccaatgtccaatggacactctttaacacttccctaaaataacacttgttcctctcaagaagaaatataaa 41871813  T
Q  103 gaccagttgatgcctcctagaaactaaatatatttt-ttctgagttggatcataaagctcgtcaaaccacgatagactttaaagttcacaaaacggtgaa 201  Q
    ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  41871812 gactagttgatgcctc-tagaaactaaatatattttcttctgagttggatcataaagctcgtcaaaccacgacagactttaaagttcacaaaacggtaaa 41871714  T
Q  202 agagatgcgcatacaaattactcagcaacgaaatcttcatgttgttaaagggagtaggactcattcacatgcataactgtcctcagacaatttctgacta 301  Q
    |||||| |||||||||||||| || ||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41871713 agagatacgcatacaaattacccatcaacgaaatcttcatgtcgttagagggagtaggactcatgcacatgcataactgtcctcagacaatttctgacta 41871614  T
Q  302 attgaacaaacatctgccggcaacattatgttt 334  Q
    |||||||||| ||||||||||||||||||||||    
T  41871613 attgaacaaatatctgccggcaacattatgttt 41871581  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 6061531 - 6061593
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttcc 64  Q
    ||||||||||||| |||||||  | | ||||||||||||| ||||||| ||||||||| ||||    
T  6061531 caatacaacatttctaaattttccatcttaaccaatgtcctaaagacattctttagcatttcc 6061593  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 12349582 - 12349548
Alignment:
Q  4 atacaacatttttaaatttgtcctattaaccaatg 38  Q
    |||||||||||||||||||||||| ||||||||||    
T  12349582 atacaacatttttaaatttgtcctcttaaccaatg 12349548  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 39418158 - 39418104
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactcttta 56  Q
    ||||||||||||| ||||||||| || ||||||||||||| || |||||||||||    
T  39418158 caatacaacatttctaaatttgtactcttaaccaatgtcctaaggacactcttta 39418104  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 44478770 - 44478838
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccctaaaa 70  Q
    ||||||||||||||||| |||||||| ||||| |||||  ||| ||||||||||| || || |||||||    
T  44478770 caatacaacatttttaagtttgtcctcttaacaaatgttgaaaggacactctttaacattttcctaaaa 44478838  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14120864 - 14120827
Alignment:
Q  1 tcaatacaacatttttaaatttgtcctattaaccaatg 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14120864 tcaatacaacatttttaaatttgtcctcttaaccaatg 14120827  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34512716 - 34512753
Alignment:
Q  3 aatacaacatttttaaatttgtcctattaaccaatgtc 40  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  34512716 aatacaacatttctaaatttgtcctcttaaccaatgtc 34512753  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 5074900 - 5074964
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccct 66  Q
    ||||||||||||| ||| |||||| | |||||||||| || |||| |||||||||||| ||||||    
T  5074900 caatacaacatttctaagtttgtcatcttaaccaatgccctaaaggcactctttagcatttccct 5074964  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 39972192 - 39972135
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagca 59  Q
    ||||||||||||| |||||||||| | |||||||||| || || | ||||||||||||    
T  39972192 caatacaacatttctaaatttgtcttcttaaccaatgccctaagggcactctttagca 39972135  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13520690 - 13520750
Alignment:
Q  5 tacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccc 65  Q
    |||||||||| ||||||| |||| ||||||||||||  || |||||| ||||||| |||||    
T  13520690 tacaacatttctaaatttatccttttaaccaatgtcttaaggacactttttagcatttccc 13520750  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13610225 - 13610285
Alignment:
Q  5 tacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccc 65  Q
    |||||||||| ||||||| |||| ||||||||||||  || |||||| ||||||| |||||    
T  13610225 tacaacatttctaaatttatccttttaaccaatgtcttaaggacactttttagcatttccc 13610285  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29213401 - 29213346
Alignment:
Q  1 tcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactcttta 56  Q
    |||||| ||| ||| ||||||||||||||||||||||| || || |||||||||||    
T  29213401 tcaatataacgtttctaaatttgtcctattaaccaatgccctaaggacactcttta 29213346  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 4298407 - 4298443
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatg 38  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4298407 caatacaacatttttaaatttgtcattttaaccaatg 4298443  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 12060099 - 12060035
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccct 66  Q
    |||||||| |||| |||||||||||| |||||||||  || |||| ||||||||| || ||||||    
T  12060099 caatacaatatttctaaatttgtcctcttaaccaataccccaaaggcactctttaacatttccct 12060035  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 50673149 - 50673217
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccctaaaa 70  Q
    |||||||||||||||||||||  | | |||||||||| || || | |||||||||||| |||| |||||    
T  50673149 caatacaacatttttaaatttaccttcttaaccaatgccctaagggcactctttagcatttccataaaa 50673217  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 33901337 - 33901375
Alignment:
Q  21 ttgtcctattaaccaatgtccaaaagacactctttagca 59  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  33901337 ttgttctattaaccaatgtcctaaagacactctttagca 33901375  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 31490725 - 31490671
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactcttta 56  Q
    ||||||| ||||||||| |||||||| ||||||||||||| || | |||||||||    
T  31490725 caatacatcatttttaagtttgtcctcttaaccaatgtcctaagggcactcttta 31490671  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21268333 - 21268277
Alignment:
Q  1 tcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttag 57  Q
    |||||||||||||| ||| |||||||| |||||||||| || || | ||||||||||    
T  21268333 tcaatacaacatttctaagtttgtcctcttaaccaatgccctaagggcactctttag 21268277  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36596648 - 36596704
Alignment:
Q  1 tcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttag 57  Q
    |||||||||||||| ||| |||||| | |||| |||||||| |||| ||||||||||    
T  36596648 tcaatacaacatttctaagtttgtcttcttaatcaatgtcctaaaggcactctttag 36596704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 40289163 - 40289199
Alignment:
Q  2 caatacaacatttttaaatttgtcctattaaccaatg 38  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  40289163 caatacaacatttttaaatttatcctcttaaccaatg 40289199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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