View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17436_high_2 (Length: 517)
Name: NF17436_high_2
Description: NF17436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17436_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 43324682 - 43324418
Alignment:
| Q |
1 |
agataaggaaataggtagaaggttaatgacattatatgaaagaataatgggaatacaaggtgataataataagagtggtcctttccttttgaaatccttt |
100 |
Q |
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| T |
43324682 |
agataaggaaataggtagaaggttaatgacattatatgaaagaataatgggaatacaaggtgataataa---gagtggtcctttccttttgaaatccttt |
43324586 |
T |
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| Q |
101 |
gtggaacagctagctcaagaaaacatctaccattcatcaaaat---------aatcttcattggtgatattaattgttccaccatcaataattacattgt |
191 |
Q |
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| T |
43324585 |
gtggaacagctagctcaagaaaacatctaccattcatcaaaattttagttaaaatcttcattggtgat----attgttccaccatcaataattacattgt |
43324490 |
T |
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| Q |
192 |
attgtatgatacttgagatcatcaaattaaattatacggagtccaaaccaaacagaagagtctttttcaacaaacac |
268 |
Q |
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| T |
43324489 |
attgtatgatacttgagatcatcaaattaaattatacggagt-----ccaaacagaagagtccttttcaacaaacac |
43324418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 362 - 500
Target Start/End: Complemental strand, 43323248 - 43323096
Alignment:
| Q |
362 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaac--------------aaatgtgtaattataga |
447 |
Q |
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| T |
43323248 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaaccagatgattcaaacaaatctgtaattataga |
43323149 |
T |
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| Q |
448 |
tattcatagacaaaatgatattgtttacaaagtacaaatcccattgtcatata |
500 |
Q |
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| T |
43323148 |
tattcataaacaaaatgatattgtttacaaagtacaaatcccattgtcatata |
43323096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 43324276 - 43324216
Alignment:
| Q |
274 |
aaccaaatatatttcagttaccacttgattgatagtgtcagaatgagtttaattggtaatatatt |
338 |
Q |
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| T |
43324276 |
aaccaaatatatttcagttaccacttgat----agtgtcagaatgagtttaattggtaacatatt |
43324216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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