View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17436_low_1 (Length: 578)
Name: NF17436_low_1
Description: NF17436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17436_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 9214624 - 9214079
Alignment:
| Q |
18 |
aggcatatgttgaagaataatagttcaaaccaataaaatcaaatgaaccaattagtagcctagcttgttttgcattgaattttggtaatcttgctccaac |
117 |
Q |
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| T |
9214624 |
aggcatatgttgaagaataatagttcaaaccaataaaatcaaatgaaccaatgagtagcctagcttgttttgcattgaattttggtaatcttgctccaac |
9214525 |
T |
|
| Q |
118 |
aagggatctcatgctttttggataatctcctgatgttagtggatccataaacctgtaatcaatcaacttttgattaaacattttgtccacaaattcattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9214524 |
aagggatctcatgctttttggataatctcctgatgttagtggatccataaacctgtaatcaatcaacttttgattaaacattttgtccacaaattcattt |
9214425 |
T |
|
| Q |
218 |
aaccatatcacaaa---tatatgacctagaaatgtttatagaccttagaaaaccaatgataacaaaaccctaatgttaatccatatttttatcttttgta |
314 |
Q |
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| T |
9214424 |
aaccatatcacaaaaaatatatgacctagaaatgtttatagaccttagaaaaccaatgataacaaaaccctaatgttaatccatatttttatcttttgta |
9214325 |
T |
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| Q |
315 |
aaccacatcgaagagtttttgctttttaaaatcaaaatatgtatttacattttgaaaataaatcaaaaagagtgaggggaagagaagctcttaccatcca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9214324 |
aaccacatcgaagagtttttgctttttaaaatcaaaatatgtatttacattttgaaaataaatcaaaaagagtgaggggaagagaagctcttaccatcca |
9214225 |
T |
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| Q |
415 |
tacatgaagtcaacagctctttcagcagctttctggtcggatttcgaatctgagagtggcaggtaccagttagctaccaaggttattcctattacaccat |
514 |
Q |
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| T |
9214224 |
tacatgaagtcaacagctctttcagcagctttctggtcggatttcgaatctgagagtggcaggtaccagttagctaccaaggttattcctattacaccat |
9214125 |
T |
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| Q |
515 |
tttgagtttcctgcacatgtaacatataaatactttagttattcgt |
560 |
Q |
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| T |
9214124 |
tttgagtttcctgcacatgtaacatataaatactttagttattcgt |
9214079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 25159617 - 25159771
Alignment:
| Q |
18 |
aggcatatgttgaagaataatagttcaaaccaataaaatcaaatgaaccaattagtagcctagcttgttttgcattgaattttggtaatcttgctccaac |
117 |
Q |
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|||||||||||||||| |||||||| | |||||||||||||||||| ||||| ||||| ||| ||| ||| ||||||||||||||| || | ||||| |
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| T |
25159617 |
aggcatatgttgaagagtaatagtttagaccaataaaatcaaatgagccaatgagtagtttagtttgcattgtattgaattttggtaacctagaaccaac |
25159716 |
T |
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| Q |
118 |
aagggatctcatgctttttggataatctcctgatgttagtggatccataaacctg |
172 |
Q |
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| T |
25159717 |
gagggctctcatgcttttgggataatctcctgatgttagtggatccataaacctg |
25159771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 403 - 520
Target Start/End: Original strand, 25159873 - 25159990
Alignment:
| Q |
403 |
tcttaccatccatacatgaagtcaacagctctttcagcagctttctggtcggatttcgaatctgagagtggcaggtaccagttagctaccaaggttattc |
502 |
Q |
| |
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||||||||||||||||| || |||| |||||||| || ||||| ||||||||||| |||||||||||||| || ||||| || | ||| |||||||| | |
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| T |
25159873 |
tcttaccatccatacataaaatcaattgctctttctgctgctttttggtcggatttggaatctgagagtggaagataccaattcgttactaaggttatgc |
25159972 |
T |
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| Q |
503 |
ctattacaccattttgag |
520 |
Q |
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|||||||||| ||||||| |
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| T |
25159973 |
ctattacacccttttgag |
25159990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 42165804 - 42165870
Alignment:
| Q |
112 |
tccaacaagggatctcatgctttttggataatctcctgatgttagtggatccataaacctgtaatca |
178 |
Q |
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|||||||||||| | ||||||||||||||| | ||| | ||||||||| ||||| |||||||||||| |
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| T |
42165804 |
tccaacaagggaacgcatgctttttggatattttcccgttgttagtggttccatgaacctgtaatca |
42165870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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