View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17436_low_6 (Length: 346)
Name: NF17436_low_6
Description: NF17436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17436_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 133 - 336
Target Start/End: Original strand, 37280695 - 37280898
Alignment:
| Q |
133 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
232 |
Q |
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| T |
37280695 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
37280794 |
T |
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| Q |
233 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
332 |
Q |
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| T |
37280795 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
37280894 |
T |
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| Q |
333 |
tttg |
336 |
Q |
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|||| |
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| T |
37280895 |
tttg |
37280898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 143 - 334
Target Start/End: Original strand, 37261133 - 37261321
Alignment:
| Q |
143 |
ttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatgacggcgatgaa |
242 |
Q |
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| T |
37261133 |
ttcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattgaagatgacggcgatgaa |
37261232 |
T |
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| Q |
243 |
tatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcctt |
334 |
Q |
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| T |
37261233 |
tatcttgttggaactagaagcggggatcctccttcagca---ggcggtattgtggcgggacccattggtggacccgtgcctcctggtgcctt |
37261321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 133 - 334
Target Start/End: Original strand, 37264896 - 37265094
Alignment:
| Q |
133 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
232 |
Q |
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||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
37264896 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtctcgcctatgctgcagatgcaccagcacctattgaagatga |
37264995 |
T |
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| Q |
233 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
332 |
Q |
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| T |
37264996 |
cggcgatgaatatcttgttggaactagaagtggggatcctccttcagca---ggtggtattgtggcgggacccattggtggacccgtgcctccgggtgcc |
37265092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 37276846 - 37277007
Alignment:
| Q |
133 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattga------ |
226 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
37276846 |
tcatggcacattcaaggcatgttgttattctagcccttgtaatgttagccatgattggccttgcctatgctgcagatgcaccagcacctgctgagagtga |
37276945 |
T |
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| Q |
227 |
------agatgacggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaa |
282 |
Q |
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||| || | ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37276946 |
ctttctagaagatgacgacgaatatcttgttggaactagaaagggggatcctccttcagcaa |
37277007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 37280578 - 37280614
Alignment:
| Q |
22 |
tttcctacgaatactccaacccaccaacattccttta |
58 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37280578 |
tttcctacgaatactccaacccaccaacattccttta |
37280614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 37276754 - 37276794
Alignment:
| Q |
18 |
atcatttcctacgaatactccaacccaccaacattccttta |
58 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
37276754 |
atcatttcctacgactactccaatccaccaacatttcttta |
37276794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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