View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17436_low_7 (Length: 265)
Name: NF17436_low_7
Description: NF17436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17436_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 5894930 - 5895161
Alignment:
| Q |
11 |
aagaaacaatactactcaataattgtctacaacctaggct-ttgttaggaccagtcataacaaactcataaagcttaacagcatccttaagcattttctt |
109 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5894930 |
aagaaacaatactactcaatagatttctacaacctaggttcttgttaggaccagccataacaaactcataaagcttcacagcatccttaagcattttctt |
5895029 |
T |
|
| Q |
110 |
caaaataaagctttcatgaaaggaaagataggtattttctcctatcttgaatccagcactcctcatatcataaactaacttccaaaactgatcaatcaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895030 |
caaaataaagctttcatgaaaggaaagataggtattttctcctatcttgaatccagcactcctcatatcataaactaacttccaaaactgatcaatcaaa |
5895129 |
T |
|
| Q |
210 |
tactcgctttgaagaatcatcgccatcttagt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5895130 |
tactcgctttgaagaatcatcgccatcttagt |
5895161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University