View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17436_low_8 (Length: 259)
Name: NF17436_low_8
Description: NF17436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17436_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 9335586 - 9335751
Alignment:
| Q |
1 |
ataaatcaaatgaaccatatgatttaaatatgcaaatgatccagtcagtagcggtcactagaggccaatatgaaatacaatgtacgggtttttgcaaaaa |
100 |
Q |
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| T |
9335586 |
ataaatcaaatgaaccatatgatttaaatatgcaaatgatccattcagtagcggtcaccagaggccaatatgaaatacaatgtacaggtttttgcaaaaa |
9335685 |
T |
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| Q |
101 |
cctgccacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa |
166 |
Q |
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| T |
9335686 |
cctgctacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa |
9335751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 9336150 - 9336190
Alignment:
| Q |
200 |
aagtagaaatcaagtattaaattattatcacctccccgcat |
240 |
Q |
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| T |
9336150 |
aagtagaaatcaagtattaaattattatcacctccccgcat |
9336190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 9336026 - 9336056
Alignment:
| Q |
163 |
tcaaattcactcaaataaaaaatgttaaata |
193 |
Q |
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| T |
9336026 |
tcaaattcactcaaataaaaaatgttaaata |
9336056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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